miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 3' -44.2 NC_001847.1 + 52202 0.67 0.999978
Target:  5'- ------gGCcUGGCCGcgggucgcggccUCGACAGCGAg -3'
miRNA:   3'- cuaaauaUGaACCGGC------------AGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 96292 0.68 0.999958
Target:  5'- ----cGUACUcggGGCCGgcggCGGCAAUGGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCa---GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 34557 0.68 0.999924
Target:  5'- -----cUGCUcGGCCGcugCAGCGGCGGc -3'
miRNA:   3'- cuaaauAUGAaCCGGCa--GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 110153 0.69 0.999899
Target:  5'- cGAUg---GCcaUGGCCaUCAACAGCGAc -3'
miRNA:   3'- -CUAaauaUGa-ACCGGcAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 20881 0.69 0.999708
Target:  5'- cGAUaUGUACUUcGGCUGg--GCAGCGAg -3'
miRNA:   3'- -CUAaAUAUGAA-CCGGCaguUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 126447 0.7 0.999627
Target:  5'- ------aGCcgUGGCCGUCGGCAucguCGAc -3'
miRNA:   3'- cuaaauaUGa-ACCGGCAGUUGUu---GCU- -5'
6672 3' -44.2 NC_001847.1 + 123448 0.7 0.999404
Target:  5'- gGGUUUGccggGCUUGGCC--CGGCGACGGc -3'
miRNA:   3'- -CUAAAUa---UGAACCGGcaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 121475 0.71 0.998291
Target:  5'- ----cGUACUcGGCCaUCAGCAGCGu -3'
miRNA:   3'- cuaaaUAUGAaCCGGcAGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 33221 0.71 0.997929
Target:  5'- uGAUggcgAUGC-UGGCCGagugcggcuUCGACGACGAc -3'
miRNA:   3'- -CUAaa--UAUGaACCGGC---------AGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 58281 0.76 0.968412
Target:  5'- ---aUGUGCUcGGCCG-CGGCGACGGc -3'
miRNA:   3'- cuaaAUAUGAaCCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 67293 0.67 0.999978
Target:  5'- ------gACUuggUGGCCG-CGGCGACGGc -3'
miRNA:   3'- cuaaauaUGA---ACCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 35891 0.67 0.999984
Target:  5'- ---aUAUACUcccGcGCCGgcugCGACAACGAg -3'
miRNA:   3'- cuaaAUAUGAa--C-CGGCa---GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 126597 0.67 0.999984
Target:  5'- -----------cGCCGUCGACGACGAc -3'
miRNA:   3'- cuaaauaugaacCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 31217 0.67 0.999984
Target:  5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 85563 0.67 0.999989
Target:  5'- ---aUGUcCUcGGCCGUCGucuCAACGGc -3'
miRNA:   3'- cuaaAUAuGAaCCGGCAGUu--GUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 94706 0.67 0.999989
Target:  5'- ----aGUAC-UGGCgCuUCAGCAGCGAg -3'
miRNA:   3'- cuaaaUAUGaACCG-GcAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 81786 0.66 0.999996
Target:  5'- ----gGUGCccgcGGCCGcCAGCAGCGc -3'
miRNA:   3'- cuaaaUAUGaa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 114593 0.66 0.999997
Target:  5'- ---gUGUACgUGGCCGUCccCGcCGAg -3'
miRNA:   3'- cuaaAUAUGaACCGGCAGuuGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 78341 0.66 0.999998
Target:  5'- ------gGCUUGGgCGccgCGGCGGCGAa -3'
miRNA:   3'- cuaaauaUGAACCgGCa--GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 82317 0.66 0.999998
Target:  5'- ----aAUGCgggcggGGUCGcCGGCGACGAg -3'
miRNA:   3'- cuaaaUAUGaa----CCGGCaGUUGUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.