miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 31162 0.66 0.640318
Target:  5'- cGGUggccuucUGCGCgGCCGcgcuGCCGGAGCCGcG-Cg -3'
miRNA:   3'- -CCA-------GCGCGgCGGC----CGGUCUUGGC-CaG- -5'
6672 5' -62.3 NC_001847.1 + 132145 0.66 0.639337
Target:  5'- cGG-CGCuGCUGCCgcgcaggguggGGCCGGcgaacauaaaauGCCGGUCu -3'
miRNA:   3'- -CCaGCG-CGGCGG-----------CCGGUCu-----------UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 60387 0.66 0.631485
Target:  5'- gGGgcgCGCGCCGaCCGcGUCucccAGCCgGGUCg -3'
miRNA:   3'- -CCa--GCGCGGC-GGC-CGGuc--UUGG-CCAG- -5'
6672 5' -62.3 NC_001847.1 + 111315 0.66 0.631485
Target:  5'- gGGgccgUGCGCgCGCUGGaCCGcGAGCaguGGUCg -3'
miRNA:   3'- -CCa---GCGCG-GCGGCC-GGU-CUUGg--CCAG- -5'
6672 5' -62.3 NC_001847.1 + 41383 0.66 0.631485
Target:  5'- cGGcCGgGCCGCC-GCCGGcAGCCGcG-Cg -3'
miRNA:   3'- -CCaGCgCGGCGGcCGGUC-UUGGC-CaG- -5'
6672 5' -62.3 NC_001847.1 + 93128 0.66 0.631485
Target:  5'- ---gGCGaaGCUGGCCGGGcuGCCGG-Cg -3'
miRNA:   3'- ccagCGCggCGGCCGGUCU--UGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 77838 0.66 0.631485
Target:  5'- -uUUGCGCCaCUGGCCAGcgcGCUGGg- -3'
miRNA:   3'- ccAGCGCGGcGGCCGGUCu--UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 24748 0.66 0.631485
Target:  5'- gGGcCGUGCaGCCGGCUgAGGugcgacGCgCGGUCg -3'
miRNA:   3'- -CCaGCGCGgCGGCCGG-UCU------UG-GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 125630 0.66 0.631485
Target:  5'- --gCGCGCCGCCcGCuCGGcuCgGGUCc -3'
miRNA:   3'- ccaGCGCGGCGGcCG-GUCuuGgCCAG- -5'
6672 5' -62.3 NC_001847.1 + 120085 0.66 0.631485
Target:  5'- --cCGgGCCGCCGGUCAGAuggCGcUCg -3'
miRNA:   3'- ccaGCgCGGCGGCCGGUCUug-GCcAG- -5'
6672 5' -62.3 NC_001847.1 + 114388 0.66 0.631485
Target:  5'- --gCGCGCCGacgaaGGCgAGGcccgccucaccGCCGGUCu -3'
miRNA:   3'- ccaGCGCGGCgg---CCGgUCU-----------UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 130525 0.66 0.631485
Target:  5'- cGG-CGgGCCGcCCGcGCC-GAGCUGGcCg -3'
miRNA:   3'- -CCaGCgCGGC-GGC-CGGuCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 27712 0.66 0.631485
Target:  5'- cGG-CGgGCCGcCCGcGCC-GAGCUGGcCg -3'
miRNA:   3'- -CCaGCgCGGC-GGC-CGGuCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 47584 0.66 0.621671
Target:  5'- --aCGCGCCGaggaaGGCCGGcGGCaGGUCg -3'
miRNA:   3'- ccaGCGCGGCgg---CCGGUC-UUGgCCAG- -5'
6672 5' -62.3 NC_001847.1 + 29618 0.66 0.621671
Target:  5'- -uUCGcCGCCGCCGuGCUgucGGAcguGCUGGUg -3'
miRNA:   3'- ccAGC-GCGGCGGC-CGG---UCU---UGGCCAg -5'
6672 5' -62.3 NC_001847.1 + 34807 0.66 0.621671
Target:  5'- --cCGCgGCCGCUGGCgCGGcaggccGACCGGg- -3'
miRNA:   3'- ccaGCG-CGGCGGCCG-GUC------UUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 64434 0.66 0.621671
Target:  5'- cGG-CGCGUCGUagucggcggccaCGGCCAGccCCGGg- -3'
miRNA:   3'- -CCaGCGCGGCG------------GCCGGUCuuGGCCag -5'
6672 5' -62.3 NC_001847.1 + 74662 0.66 0.621671
Target:  5'- --cUGCGCCuggaGCCGGCC-GAGCCGcGg- -3'
miRNA:   3'- ccaGCGCGG----CGGCCGGuCUUGGC-Cag -5'
6672 5' -62.3 NC_001847.1 + 37712 0.66 0.621671
Target:  5'- cGUgCGCGCUGCU-GCUGGGcgcGCCGGUUg -3'
miRNA:   3'- cCA-GCGCGGCGGcCGGUCU---UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 96103 0.66 0.621671
Target:  5'- aGUCgGgGCCggaGCCggagucggGGCCGGAGCCGGa- -3'
miRNA:   3'- cCAG-CgCGG---CGG--------CCGGUCUUGGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.