miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 14936 0.68 0.642844
Target:  5'- aCGGCCUac-CGCUGGCU---GCUGUGg -3'
miRNA:   3'- -GCCGGAgauGCGACCGGcucCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 57086 0.68 0.612317
Target:  5'- gCGGCCagcgCUGCGCUGGaCCGccGCg--- -3'
miRNA:   3'- -GCCGGa---GAUGCGACC-GGCucCGauac -5'
6673 3' -58.8 NC_001847.1 + 59885 0.68 0.612317
Target:  5'- gCGGCCUCcGCGUUGG-CGAGGa---- -3'
miRNA:   3'- -GCCGGAGaUGCGACCgGCUCCgauac -5'
6673 3' -58.8 NC_001847.1 + 51206 0.68 0.612317
Target:  5'- uCGGCgCUCggUGCUGGCCGuGGUg--- -3'
miRNA:   3'- -GCCG-GAGauGCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 105355 0.68 0.612317
Target:  5'- gCGGCgCUCccgcCGCcgGGCCGGGGCg--- -3'
miRNA:   3'- -GCCG-GAGau--GCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 130480 0.68 0.612317
Target:  5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 34142 0.68 0.613334
Target:  5'- uGGCCgccgcggcgagcgcgCUGCGCgaggcGGCUGAGGCg--- -3'
miRNA:   3'- gCCGGa--------------GAUGCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 133009 0.68 0.623506
Target:  5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3'
miRNA:   3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5'
6673 3' -58.8 NC_001847.1 + 7220 0.68 0.632666
Target:  5'- gGGCCguccauggcgCUGCagcgGCUGGUCGGguGGCUGUGc -3'
miRNA:   3'- gCCGGa---------GAUG----CGACCGGCU--CCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 46911 0.68 0.612317
Target:  5'- aGGCUUCgggggGCGCgucgGGCCcGGGCUccGg -3'
miRNA:   3'- gCCGGAGa----UGCGa---CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 2542 0.68 0.612317
Target:  5'- gCGGCgCUCccgcCGCcgGGCCGGGGCg--- -3'
miRNA:   3'- -GCCG-GAGau--GCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 27667 0.68 0.612317
Target:  5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30196 0.68 0.623506
Target:  5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3'
miRNA:   3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5'
6673 3' -58.8 NC_001847.1 + 31165 0.68 0.642844
Target:  5'- uGGCCuUCUGCGC-GGCCGc-GCUGc- -3'
miRNA:   3'- gCCGG-AGAUGCGaCCGGCucCGAUac -5'
6673 3' -58.8 NC_001847.1 + 111670 0.68 0.642844
Target:  5'- gCGcGCCga-GCGCgaUGGCCGAGGCg--- -3'
miRNA:   3'- -GC-CGGagaUGCG--ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 28247 0.68 0.642844
Target:  5'- -cGCCg--ACGCUgaggccgaGGCCGAGGCUGa- -3'
miRNA:   3'- gcCGGagaUGCGA--------CCGGCUCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 132036 0.68 0.653014
Target:  5'- aGGCgCUCUAC-CUGGCCGcuaucgugggGGGCg--- -3'
miRNA:   3'- gCCG-GAGAUGcGACCGGC----------UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 97006 0.68 0.663167
Target:  5'- gGGUCggcgGCGCUGGCCGcgggGGGCa--- -3'
miRNA:   3'- gCCGGaga-UGCGACCGGC----UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 7772 0.68 0.653014
Target:  5'- aCGGCCg-UugGU--GCCGAGGCUcgGg -3'
miRNA:   3'- -GCCGGagAugCGacCGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 131060 0.68 0.642844
Target:  5'- -cGCCg--ACGCUgaggccgaGGCCGAGGCUGa- -3'
miRNA:   3'- gcCGGagaUGCGA--------CCGGCUCCGAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.