miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 33333 0.7 0.539942
Target:  5'- aCGGCCUCgcggccugggugGCGCUGcuGCaCGAGGCg--- -3'
miRNA:   3'- -GCCGGAGa-----------UGCGAC--CG-GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33575 0.67 0.693443
Target:  5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3'
miRNA:   3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 33975 0.69 0.551845
Target:  5'- gGcGCCgggcGCGCUGGCCG-GGCUGg- -3'
miRNA:   3'- gC-CGGaga-UGCGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 34142 0.68 0.613334
Target:  5'- uGGCCgccgcggcgagcgcgCUGCGCgaggcGGCUGAGGCg--- -3'
miRNA:   3'- gCCGGa--------------GAUGCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 34595 0.67 0.68339
Target:  5'- aGGCCcggGCGCUGGCgCGGcGGCg--- -3'
miRNA:   3'- gCCGGagaUGCGACCG-GCU-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 34756 0.66 0.769423
Target:  5'- gCGGCCgagcuggcgcggCUGCGCgccgcGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGa-----------GAUGCGa----CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 34809 0.66 0.742771
Target:  5'- gCGGCCgcugGCGCggcaGGCCGAccgGGCgcUGg -3'
miRNA:   3'- -GCCGGaga-UGCGa---CCGGCU---CCGauAC- -5'
6673 3' -58.8 NC_001847.1 + 36866 0.67 0.713389
Target:  5'- gCGGCCgagcUCUACGCggGGCUGcuGGCg--- -3'
miRNA:   3'- -GCCGG----AGAUGCGa-CCGGCu-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 36938 0.71 0.483812
Target:  5'- uGuGCUUCU-CGCUGGCCGAgcgggGGCUGc- -3'
miRNA:   3'- gC-CGGAGAuGCGACCGGCU-----CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 37465 0.69 0.592027
Target:  5'- gGGCCU--GCGUUGGCCG-GGCc--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 37556 0.7 0.49712
Target:  5'- gCGGCC-CUucggaagacgcggcgGCGCUGGCCGcugcGGCUGc- -3'
miRNA:   3'- -GCCGGaGA---------------UGCGACCGGCu---CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 39718 0.66 0.736956
Target:  5'- uGG-CUCUGCGCUGucgggccuuggcuccGCCGAGGaggAUGc -3'
miRNA:   3'- gCCgGAGAUGCGAC---------------CGGCUCCga-UAC- -5'
6673 3' -58.8 NC_001847.1 + 43826 0.76 0.250479
Target:  5'- gCGGCCgcuUCUuugccGCGCUGGCgcugcuggagccCGAGGCUGUGu -3'
miRNA:   3'- -GCCGG---AGA-----UGCGACCG------------GCUCCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 45835 0.67 0.703446
Target:  5'- gGGCCacucgCUGgGCggcacGGCCGAGGCc--- -3'
miRNA:   3'- gCCGGa----GAUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 46911 0.68 0.612317
Target:  5'- aGGCUUCgggggGCGCgucgGGCCcGGGCUccGg -3'
miRNA:   3'- gCCGGAGa----UGCGa---CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 50103 0.7 0.532055
Target:  5'- uCGGCCagCUGCuggggGCcgGGCUGGGGCUGUc -3'
miRNA:   3'- -GCCGGa-GAUG-----CGa-CCGGCUCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 50373 0.71 0.474411
Target:  5'- cCGGCgUCgcccUGCUGGCCGuGGCcAUGc -3'
miRNA:   3'- -GCCGgAGau--GCGACCGGCuCCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 51206 0.68 0.612317
Target:  5'- uCGGCgCUCggUGCUGGCCGuGGUg--- -3'
miRNA:   3'- -GCCG-GAGauGCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 51921 0.67 0.68339
Target:  5'- aCGGgCUCacgGCGaucgUGGCCGGGGCg--- -3'
miRNA:   3'- -GCCgGAGa--UGCg---ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 52022 0.67 0.671272
Target:  5'- gCGGCCgccgaggaggugCUACGCgaGGCgGAGGCc--- -3'
miRNA:   3'- -GCCGGa-----------GAUGCGa-CCGgCUCCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.