miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 30196 0.68 0.623506
Target:  5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3'
miRNA:   3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5'
6673 3' -58.8 NC_001847.1 + 27667 0.68 0.612317
Target:  5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 2542 0.68 0.612317
Target:  5'- gCGGCgCUCccgcCGCcgGGCCGGGGCg--- -3'
miRNA:   3'- -GCCG-GAGau--GCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 46911 0.68 0.612317
Target:  5'- aGGCUUCgggggGCGCgucgGGCCcGGGCUccGg -3'
miRNA:   3'- gCCGGAGa----UGCGa---CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 52022 0.67 0.671272
Target:  5'- gCGGCCgccgaggaggugCUACGCgaGGCgGAGGCc--- -3'
miRNA:   3'- -GCCGGa-----------GAUGCGa-CCGgCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 34595 0.67 0.68339
Target:  5'- aGGCCcggGCGCUGGCgCGGcGGCg--- -3'
miRNA:   3'- gCCGGagaUGCGACCG-GCU-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 51921 0.67 0.68339
Target:  5'- aCGGgCUCacgGCGaucgUGGCCGGGGCg--- -3'
miRNA:   3'- -GCCgGAGa--UGCg---ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 69332 0.67 0.68339
Target:  5'- gGGCCUCggGCGCU-GCUGGcGGCgcugGUGc -3'
miRNA:   3'- gCCGGAGa-UGCGAcCGGCU-CCGa---UAC- -5'
6673 3' -58.8 NC_001847.1 + 6693 0.67 0.68339
Target:  5'- cCGGCCgg-GCGCgcgcgcagGGCCGAGcGCa--- -3'
miRNA:   3'- -GCCGGagaUGCGa-------CCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 29982 0.67 0.68339
Target:  5'- -cGCCUUcGCGC-GGCUGcaGGGCUAUGu -3'
miRNA:   3'- gcCGGAGaUGCGaCCGGC--UCCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 13437 0.67 0.693443
Target:  5'- gGGCCU--GCGCUGGCUGuaucuagcGGGCg--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGC--------UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 70535 0.67 0.693443
Target:  5'- gCGGCgUgCUgGCGCUGGCCGAcucggaGGCg--- -3'
miRNA:   3'- -GCCGgA-GA-UGCGACCGGCU------CCGauac -5'
6673 3' -58.8 NC_001847.1 + 133804 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 57756 0.67 0.693443
Target:  5'- uCGGC----GCGCUGGCCacGGGGCUGcUGg -3'
miRNA:   3'- -GCCGgagaUGCGACCGG--CUCCGAU-AC- -5'
6673 3' -58.8 NC_001847.1 + 28575 0.67 0.703446
Target:  5'- aCGGCgccgGgGCUGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGgagaUgCGACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 45835 0.67 0.703446
Target:  5'- gGGCCacucgCUGgGCggcacGGCCGAGGCc--- -3'
miRNA:   3'- gCCGGa----GAUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33030 0.67 0.710413
Target:  5'- cCGcCCUCUccgccgagcuggacGCGCUcgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCcGGAGA--------------UGCGA---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 68059 0.67 0.713389
Target:  5'- gCGGCCUCgcgGCGCgccugcGGC-GGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--UGCGa-----CCGgCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 70695 0.67 0.713389
Target:  5'- gGGCC-CgGgGCUGGCCGuGGCc--- -3'
miRNA:   3'- gCCGGaGaUgCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 36866 0.67 0.713389
Target:  5'- gCGGCCgagcUCUACGCggGGCUGcuGGCg--- -3'
miRNA:   3'- -GCCGG----AGAUGCGa-CCGGCu-CCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.