miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 53023 0.71 0.483812
Target:  5'- gCGGCCgCUGCGCgcucgGGCCucGGCUccGa -3'
miRNA:   3'- -GCCGGaGAUGCGa----CCGGcuCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 53581 0.67 0.723263
Target:  5'- cCGGCCccgcgcagCUGCGCggGGCCGGcGaGCUcgGc -3'
miRNA:   3'- -GCCGGa-------GAUGCGa-CCGGCU-C-CGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 55508 0.66 0.733061
Target:  5'- gGGCC-CUGCuGCUGGCggcgcccgccgCGGGGCg--- -3'
miRNA:   3'- gCCGGaGAUG-CGACCG-----------GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 57086 0.68 0.612317
Target:  5'- gCGGCCagcgCUGCGCUGGaCCGccGCg--- -3'
miRNA:   3'- -GCCGGa---GAUGCGACC-GGCucCGauac -5'
6673 3' -58.8 NC_001847.1 + 57756 0.67 0.693443
Target:  5'- uCGGC----GCGCUGGCCacGGGGCUGcUGg -3'
miRNA:   3'- -GCCGgagaUGCGACCGG--CUCCGAU-AC- -5'
6673 3' -58.8 NC_001847.1 + 58273 0.66 0.752386
Target:  5'- aGGCCUCcaUGUGCUcGGCCGcGGCg--- -3'
miRNA:   3'- gCCGGAG--AUGCGA-CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 59237 0.67 0.713389
Target:  5'- uCGGCCgUCggcgaugGCGCcGGCCaGGGCcAUGa -3'
miRNA:   3'- -GCCGG-AGa------UGCGaCCGGcUCCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 59885 0.68 0.612317
Target:  5'- gCGGCCUCcGCGUUGG-CGAGGa---- -3'
miRNA:   3'- -GCCGGAGaUGCGACCgGCUCCgauac -5'
6673 3' -58.8 NC_001847.1 + 60038 0.73 0.361669
Target:  5'- uCGGCCUCUuCGUcgGGCgCGAGGCg--- -3'
miRNA:   3'- -GCCGGAGAuGCGa-CCG-GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 62466 0.69 0.581921
Target:  5'- cCGGCCUCa--GCagGGCCGGGGUc--- -3'
miRNA:   3'- -GCCGGAGaugCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 64060 0.67 0.703446
Target:  5'- -cGCCUCUggccGCGCcGGCCGAGcGCc--- -3'
miRNA:   3'- gcCGGAGA----UGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 68059 0.67 0.713389
Target:  5'- gCGGCCUCgcgGCGCgccugcGGC-GGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--UGCGa-----CCGgCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 69252 0.69 0.581921
Target:  5'- uGGCCUaCUACGCgcGGCUGGcGGCg--- -3'
miRNA:   3'- gCCGGA-GAUGCGa-CCGGCU-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 69332 0.67 0.68339
Target:  5'- gGGCCUCggGCGCU-GCUGGcGGCgcugGUGc -3'
miRNA:   3'- gCCGGAGa-UGCGAcCGGCU-CCGa---UAC- -5'
6673 3' -58.8 NC_001847.1 + 69478 0.68 0.663167
Target:  5'- gGGgCUCc-UGCUGGCCG-GGCUGg- -3'
miRNA:   3'- gCCgGAGauGCGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 70535 0.67 0.693443
Target:  5'- gCGGCgUgCUgGCGCUGGCCGAcucggaGGCg--- -3'
miRNA:   3'- -GCCGgA-GA-UGCGACCGGCU------CCGauac -5'
6673 3' -58.8 NC_001847.1 + 70695 0.67 0.713389
Target:  5'- gGGCC-CgGgGCUGGCCGuGGCc--- -3'
miRNA:   3'- gCCGGaGaUgCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 71086 0.68 0.632666
Target:  5'- uCGGCCg--GCGC-GGCCaGAGGCg--- -3'
miRNA:   3'- -GCCGGagaUGCGaCCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 74125 0.75 0.288508
Target:  5'- cCGGCCguggugCUGCGCgugGcGCCGGGGCgaaugAUGg -3'
miRNA:   3'- -GCCGGa-----GAUGCGa--C-CGGCUCCGa----UAC- -5'
6673 3' -58.8 NC_001847.1 + 75647 0.67 0.673295
Target:  5'- gCGGCCUCgGCGCacccccugccGGCUGGGGaCUAc- -3'
miRNA:   3'- -GCCGGAGaUGCGa---------CCGGCUCC-GAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.