miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 59237 0.67 0.713389
Target:  5'- uCGGCCgUCggcgaugGCGCcGGCCaGGGCcAUGa -3'
miRNA:   3'- -GCCGG-AGa------UGCGaCCGGcUCCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 83095 0.67 0.722279
Target:  5'- aCGGCCUUcggGCGCgauaaugagccccUGGCgCGAGcGCUAg- -3'
miRNA:   3'- -GCCGGAGa--UGCG-------------ACCG-GCUC-CGAUac -5'
6673 3' -58.8 NC_001847.1 + 53581 0.67 0.723263
Target:  5'- cCGGCCccgcgcagCUGCGCggGGCCGGcGaGCUcgGc -3'
miRNA:   3'- -GCCGGa-------GAUGCGa-CCGGCU-C-CGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 33242 0.67 0.713389
Target:  5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3'
miRNA:   3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 88174 0.67 0.703446
Target:  5'- -uGCCUgCUGCGCuUGGCCcGGGCg--- -3'
miRNA:   3'- gcCGGA-GAUGCG-ACCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 64060 0.67 0.703446
Target:  5'- -cGCCUCUggccGCGCcGGCCGAGcGCc--- -3'
miRNA:   3'- gcCGGAGA----UGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 33575 0.67 0.693443
Target:  5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3'
miRNA:   3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 30991 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 87743 0.67 0.68339
Target:  5'- aCGGCCgUCUACGaCgugcGGCuCGAcGGCUAc- -3'
miRNA:   3'- -GCCGG-AGAUGC-Ga---CCG-GCU-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 121559 0.67 0.68339
Target:  5'- gGGCCUCUugGaaggUGGCCGAGu----- -3'
miRNA:   3'- gCCGGAGAugCg---ACCGGCUCcgauac -5'
6673 3' -58.8 NC_001847.1 + 82083 0.67 0.682382
Target:  5'- uCGGCgUCUgggccaaGCGCggGGCC-AGGCUcgGa -3'
miRNA:   3'- -GCCGgAGA-------UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 87566 0.67 0.673295
Target:  5'- cCGGCCUUccucggcgcgUGCGC-GGCCGccGGGCUc-- -3'
miRNA:   3'- -GCCGGAG----------AUGCGaCCGGC--UCCGAuac -5'
6673 3' -58.8 NC_001847.1 + 75647 0.67 0.673295
Target:  5'- gCGGCCUCgGCGCacccccugccGGCUGGGGaCUAc- -3'
miRNA:   3'- -GCCGGAGaUGCGa---------CCGGCUCC-GAUac -5'
6673 3' -58.8 NC_001847.1 + 33010 0.67 0.673295
Target:  5'- gCGGCCgggggGCGCgcgGGgCGAGGCg--- -3'
miRNA:   3'- -GCCGGaga--UGCGa--CCgGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 123548 0.67 0.671272
Target:  5'- aGGCCgCUGCGaacggggcuugGGCCGGGGCc--- -3'
miRNA:   3'- gCCGGaGAUGCga---------CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 55508 0.66 0.733061
Target:  5'- gGGCC-CUGCuGCUGGCggcgcccgccgCGGGGCg--- -3'
miRNA:   3'- gCCGGaGAUG-CGACCG-----------GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 83040 0.66 0.733061
Target:  5'- gCGGCCgCUaguGCGCUugGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGaGA---UGCGA--CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 88828 0.66 0.733061
Target:  5'- gCGGCCgugCUGCGCUcGGCgCuacGGCUGg- -3'
miRNA:   3'- -GCCGGa--GAUGCGA-CCG-Gcu-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 93108 0.66 0.733061
Target:  5'- aCGaGCCagUCUACguaccgggcgaaGCUGGCCG-GGCUGc- -3'
miRNA:   3'- -GC-CGG--AGAUG------------CGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 133403 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.