miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 43124 0.77 0.062311
Target:  5'- uGCCCGCagacGGCGCgggCCCGCGgGCGCUg -3'
miRNA:   3'- gCGGGCGa---CCGCGag-GGGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 53956 0.77 0.059252
Target:  5'- gCGCCgGCUGGCGCcgccgcgagcccUCCgaGCGGCGCg -3'
miRNA:   3'- -GCGGgCGACCGCG------------AGGggCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 62147 0.77 0.056338
Target:  5'- gCGCCCGCgcugcGGCcaGCUCCCgCGCGGgCGCg -3'
miRNA:   3'- -GCGGGCGa----CCG--CGAGGG-GCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 30237 0.77 0.059252
Target:  5'- gGCCCGCcgccGCGCgggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCGac--CGCGa--GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 106801 0.76 0.070642
Target:  5'- gGCCCG--GGCGCgcggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCgaCCGCGa---GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 37110 0.76 0.067188
Target:  5'- gGCCCGCUGGUGUUCaugcuCUGgGGCGCg -3'
miRNA:   3'- gCGGGCGACCGCGAGg----GGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 35943 0.76 0.067188
Target:  5'- gCGCuuGCgccugGGCGCUgCUgGCGGCGCUg -3'
miRNA:   3'- -GCGggCGa----CCGCGAgGGgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 66353 0.76 0.072432
Target:  5'- gGCCCGCUcGCGCggCCgCCGCGGCGa- -3'
miRNA:   3'- gCGGGCGAcCGCGa-GG-GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 131162 0.76 0.068894
Target:  5'- gGCCgCGCUGGCGCUgcucacggcccaCCUCGCgcuGGCGCUg -3'
miRNA:   3'- gCGG-GCGACCGCGA------------GGGGCG---CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 102774 0.76 0.067188
Target:  5'- aCGCCCGCgacgccGGCGCcCCCCGCgcgGGgGCUg -3'
miRNA:   3'- -GCGGGCGa-----CCGCGaGGGGCG---CCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 83485 0.76 0.067188
Target:  5'- cCGCCCuguuGCgGGCGCagCgCCGCGGCGCUg -3'
miRNA:   3'- -GCGGG----CGaCCGCGa-GgGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 50039 0.76 0.076909
Target:  5'- aGCCCGCggGGCGCgguggcggccgcgggUCCgCgCGCGGCGCg -3'
miRNA:   3'- gCGGGCGa-CCGCG---------------AGG-G-GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 68072 0.76 0.076145
Target:  5'- gCGCCUGCggcggGGCGaaCgCCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa----CCGCgaGgGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 66351 0.76 0.074266
Target:  5'- gGCgCCGCcgUGGCGaucgUCCCCGUGGCGCc -3'
miRNA:   3'- gCG-GGCG--ACCGCg---AGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 65917 0.76 0.072432
Target:  5'- uCGCCguCGCggcgucGGCGUUCCCCGCGGaCGCc -3'
miRNA:   3'- -GCGG--GCGa-----CCGCGAGGGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 94224 0.76 0.070642
Target:  5'- aGCUCGCggcggGGCGC-CCgCGCGGCGCc -3'
miRNA:   3'- gCGGGCGa----CCGCGaGGgGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 34024 0.75 0.090623
Target:  5'- gGCaCCGCgcugGGCcagGCgaugggCCCCGCGGCGCg -3'
miRNA:   3'- gCG-GGCGa---CCG---CGa-----GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 95753 0.75 0.088405
Target:  5'- aGCCCgGCcGGCGCcggcUCCCCGaCGGCGUc -3'
miRNA:   3'- gCGGG-CGaCCGCG----AGGGGC-GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 65729 0.75 0.088186
Target:  5'- aGCCCGCcggggcGGCGCUCgagagcgugguggCCCGCGGgCGCa -3'
miRNA:   3'- gCGGGCGa-----CCGCGAG-------------GGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 48836 0.75 0.086238
Target:  5'- uGCCgCGCgggGGCGCcucggCCgCGCGGCGCg -3'
miRNA:   3'- gCGG-GCGa--CCGCGa----GGgGCGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.