miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 129948 0.66 0.370856
Target:  5'- gGCgCGCUuGcCGCg-CUCGCGGCGCUg -3'
miRNA:   3'- gCGgGCGAcC-GCGagGGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 86 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 52910 0.66 0.35592
Target:  5'- gGUCCGCgGGCaGCggCUCGgGGCGCc -3'
miRNA:   3'- gCGGGCGaCCG-CGagGGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 26510 0.66 0.363335
Target:  5'- gGCCUGCcgGGCGCggggCCgGgGGCGUUc -3'
miRNA:   3'- gCGGGCGa-CCGCGag--GGgCgCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 52390 0.66 0.363335
Target:  5'- aGCCCuuccgGCaaGCGCUCCagcgcggGCGGCGCg -3'
miRNA:   3'- gCGGG-----CGacCGCGAGGgg-----CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 30853 0.66 0.348612
Target:  5'- gCGCcgCCGCUGcG-GCUCUgCCGCGGCGg- -3'
miRNA:   3'- -GCG--GGCGAC-CgCGAGG-GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 98313 0.66 0.35445
Target:  5'- aCGUCCGCcagcccccagucGGCGCg-CCgGUGGCGCa -3'
miRNA:   3'- -GCGGGCGa-----------CCGCGagGGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 102815 0.66 0.370099
Target:  5'- gGCCCGCgaucGcGUGUUCCagcgggucccguuCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa---C-CGCGAGG-------------GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 78247 0.66 0.35592
Target:  5'- cCGCCCGCcGGCGUcgCCgUCGcCGGCGn- -3'
miRNA:   3'- -GCGGGCGaCCGCGa-GG-GGC-GCCGCga -5'
6674 5' -68.1 NC_001847.1 + 32493 0.66 0.363335
Target:  5'- gCGgCCGCUcccGGCGCgucaCCCCGagacGCGCg -3'
miRNA:   3'- -GCgGGCGA---CCGCGa---GGGGCgc--CGCGa -5'
6674 5' -68.1 NC_001847.1 + 132015 0.66 0.370856
Target:  5'- uGCUCGC-GGgGCUgCUCGUaaaGGCGCUc -3'
miRNA:   3'- gCGGGCGaCCgCGAgGGGCG---CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 54920 0.66 0.370856
Target:  5'- aGCUCGCgggGGUcuugagcgcccuGCgCUUCGCGGCGCa -3'
miRNA:   3'- gCGGGCGa--CCG------------CGaGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 116746 0.66 0.348612
Target:  5'- aCGCCgCGCU-GUGCUUCUgCGCGGgGCc -3'
miRNA:   3'- -GCGG-GCGAcCGCGAGGG-GCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 30799 0.66 0.348612
Target:  5'- gGCCCG--GGCGC-CUUCGCGcGCGCc -3'
miRNA:   3'- gCGGGCgaCCGCGaGGGGCGC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 78022 0.66 0.35592
Target:  5'- gGCCa--UGGCGUcCCCCaacaugcgcgcgGCGGCGCg -3'
miRNA:   3'- gCGGgcgACCGCGaGGGG------------CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 128108 0.66 0.363335
Target:  5'- aGCCCaaacgacguggcGCUGGCGCUggcggaUgCGCGGcCGCUc -3'
miRNA:   3'- gCGGG------------CGACCGCGAg-----GgGCGCC-GCGA- -5'
6674 5' -68.1 NC_001847.1 + 41868 0.66 0.363335
Target:  5'- cCGCCgacauCGC-GGCGCgauacggCCCgCGCGGCGa- -3'
miRNA:   3'- -GCGG-----GCGaCCGCGa------GGG-GCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 10698 0.66 0.370856
Target:  5'- gCGCCCG--GGCGCggCCCGCGccggccaaGCGCc -3'
miRNA:   3'- -GCGGGCgaCCGCGagGGGCGC--------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 47297 0.66 0.363335
Target:  5'- gGCCCGCgGGCcaUCacgCCCGCcGGCGUg -3'
miRNA:   3'- gCGGGCGaCCGcgAG---GGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 1027 0.66 0.35592
Target:  5'- cCGCCCGC-GGCGCg--CCGCaGCaGCa -3'
miRNA:   3'- -GCGGGCGaCCGCGaggGGCGcCG-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.