miRNA display CGI


Results 41 - 60 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 102899 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 39471 0.66 0.363335
Target:  5'- gGCCCGCgc-CGCcCCCCGCGccagagcggcccGCGCc -3'
miRNA:   3'- gCGGGCGaccGCGaGGGGCGC------------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 76593 0.66 0.348612
Target:  5'- uCGCcgCCGCUGGCgGCggcgaagaCCGCGGCGg- -3'
miRNA:   3'- -GCG--GGCGACCG-CGagg-----GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 68201 0.66 0.327337
Target:  5'- aGCCCGCacaguagggGGCGCacgggCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa--------CCGCGagg--GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 133612 0.66 0.348612
Target:  5'- gGCCCG--GGCGC-CUUCGCGcGCGCc -3'
miRNA:   3'- gCGGGCgaCCGCGaGGGGCGC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 29259 0.66 0.341413
Target:  5'- gGCCgCGCacggacuacgUGGCGgcgaUUCgCGCGGCGCUg -3'
miRNA:   3'- gCGG-GCG----------ACCGCg---AGGgGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 79995 0.66 0.341413
Target:  5'- uGgCCGCUGGgggGCUCUaCGCGcGCGCg -3'
miRNA:   3'- gCgGGCGACCg--CGAGGgGCGC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 10486 0.66 0.348612
Target:  5'- gGCCgaGCUGG-GCuUCCCCGaCGGCcccgcGCUg -3'
miRNA:   3'- gCGGg-CGACCgCG-AGGGGC-GCCG-----CGA- -5'
6674 5' -68.1 NC_001847.1 + 132280 0.66 0.334321
Target:  5'- gGCCCGCgcgucggccugGGCGCUgg-CGCGcGCGCUg -3'
miRNA:   3'- gCGGGCGa----------CCGCGAgggGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 74335 0.66 0.348612
Target:  5'- cCGCugCCGCaGGCGCgcgCgCUgGUGGCGCg -3'
miRNA:   3'- -GCG--GGCGaCCGCGa--G-GGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 65508 0.66 0.334321
Target:  5'- gGCgCgGCUGggacucGCGCUCUCCGCgcucaccgagggGGCGCUc -3'
miRNA:   3'- gCG-GgCGAC------CGCGAGGGGCG------------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 105930 0.66 0.334321
Target:  5'- gGCCCGCcgcGGCcgagaGCaccgggagCCCgGCGGCGCc -3'
miRNA:   3'- gCGGGCGa--CCG-----CGa-------GGGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 71902 0.66 0.327337
Target:  5'- gGCgCUGCagcGGCGgaCCCggcgCGCGGCGCg -3'
miRNA:   3'- gCG-GGCGa--CCGCgaGGG----GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 49551 0.66 0.334321
Target:  5'- gCGCCUuuGCcGGCGCgCCCguCGaCGGCGCc -3'
miRNA:   3'- -GCGGG--CGaCCGCGaGGG--GC-GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 58401 0.66 0.351523
Target:  5'- cCGCCCGa--GCGCccgaccguccuUCCCCGCccgaccguccuucccGGCGCg -3'
miRNA:   3'- -GCGGGCgacCGCG-----------AGGGGCG---------------CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 116942 0.66 0.334321
Target:  5'- aGCCCGUac-CGCUgCCUgGCGGUGCUc -3'
miRNA:   3'- gCGGGCGaccGCGA-GGGgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 75934 0.66 0.334321
Target:  5'- gGCgCCGCcGuGCGCcgCCacaCGCGGCGUg -3'
miRNA:   3'- gCG-GGCGaC-CGCGa-GGg--GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 15920 0.66 0.35592
Target:  5'- uGCCUGCcc-CGCcgCCCCGCGGUGg- -3'
miRNA:   3'- gCGGGCGaccGCGa-GGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 5443 0.66 0.34428
Target:  5'- gCGUCuCGCUccacaagcgcgucccGGcCGCUCUCUGCGGCGg- -3'
miRNA:   3'- -GCGG-GCGA---------------CC-GCGAGGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 66692 0.66 0.327337
Target:  5'- uCGCCUccacaGCgGGCGCUCCCgCGCcauGCuGCUg -3'
miRNA:   3'- -GCGGG-----CGaCCGCGAGGG-GCGc--CG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.