miRNA display CGI


Results 41 - 60 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 132015 0.66 0.370856
Target:  5'- uGCUCGC-GGgGCUgCUCGUaaaGGCGCUc -3'
miRNA:   3'- gCGGGCGaCCgCGAgGGGCG---CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 116746 0.66 0.348612
Target:  5'- aCGCCgCGCU-GUGCUUCUgCGCGGgGCc -3'
miRNA:   3'- -GCGG-GCGAcCGCGAGGG-GCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 45318 0.66 0.334321
Target:  5'- uCGCgCGUUGGCcgcgcGCUCCaCgGCGGCuGCc -3'
miRNA:   3'- -GCGgGCGACCG-----CGAGG-GgCGCCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 30330 0.66 0.341413
Target:  5'- gCGCgUGgUGGUGCUCuacgaCCCGCugcccggggaGGCGCUg -3'
miRNA:   3'- -GCGgGCgACCGCGAG-----GGGCG----------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 30799 0.66 0.348612
Target:  5'- gGCCCG--GGCGC-CUUCGCGcGCGCc -3'
miRNA:   3'- gCGGGCgaCCGCGaGGGGCGC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 128108 0.66 0.363335
Target:  5'- aGCCCaaacgacguggcGCUGGCGCUggcggaUgCGCGGcCGCUc -3'
miRNA:   3'- gCGGG------------CGACCGCGAg-----GgGCGCC-GCGA- -5'
6674 5' -68.1 NC_001847.1 + 54920 0.66 0.370856
Target:  5'- aGCUCGCgggGGUcuugagcgcccuGCgCUUCGCGGCGCa -3'
miRNA:   3'- gCGGGCGa--CCG------------CGaGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 10698 0.66 0.370856
Target:  5'- gCGCCCG--GGCGCggCCCGCGccggccaaGCGCc -3'
miRNA:   3'- -GCGGGCgaCCGCGagGGGCGC--------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 47297 0.66 0.363335
Target:  5'- gGCCCGCgGGCcaUCacgCCCGCcGGCGUg -3'
miRNA:   3'- gCGGGCGaCCGcgAG---GGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 86 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 78022 0.66 0.35592
Target:  5'- gGCCa--UGGCGUcCCCCaacaugcgcgcgGCGGCGCg -3'
miRNA:   3'- gCGGgcgACCGCGaGGGG------------CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 52239 0.66 0.363335
Target:  5'- aGCCCcCgGGCGCcgcgCgCCGCGGCuugGCUg -3'
miRNA:   3'- gCGGGcGaCCGCGa---GgGGCGCCG---CGA- -5'
6674 5' -68.1 NC_001847.1 + 94092 0.66 0.366331
Target:  5'- uGCCCGUgcagauuuugcauGUGCUaaaCgCCGCGGCGCg -3'
miRNA:   3'- gCGGGCGac-----------CGCGAg--G-GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 125229 0.66 0.341413
Target:  5'- cCGCCUGCcgGGCGUaCUCgGCGGC-Ca -3'
miRNA:   3'- -GCGGGCGa-CCGCGaGGGgCGCCGcGa -5'
6674 5' -68.1 NC_001847.1 + 64819 0.66 0.34428
Target:  5'- uCGUCgCGCaccgGGCGCUUCagcuccgagaccagCGCGGCGCg -3'
miRNA:   3'- -GCGG-GCGa---CCGCGAGGg-------------GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 107696 0.66 0.348612
Target:  5'- gCGCCUGCgguuggcGGCGCUcgcgggcgggcaCCCCGgGGCu-- -3'
miRNA:   3'- -GCGGGCGa------CCGCGA------------GGGGCgCCGcga -5'
6674 5' -68.1 NC_001847.1 + 15042 0.66 0.341413
Target:  5'- uCGCCgaCGCgcgGGCGCUuuaucUCCCGCcccGCGCg -3'
miRNA:   3'- -GCGG--GCGa--CCGCGA-----GGGGCGc--CGCGa -5'
6674 5' -68.1 NC_001847.1 + 91763 0.81 0.032212
Target:  5'- gGUCCGCgGGCGCUCCguCgGCGGCGCUg -3'
miRNA:   3'- gCGGGCGaCCGCGAGG--GgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 29467 0.66 0.334321
Target:  5'- gGCCCGCgcgucggccugGGCGCUgg-CGCGcGCGCUg -3'
miRNA:   3'- gCGGGCGa----------CCGCGAgggGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 35984 0.66 0.341413
Target:  5'- cCGCCgGCUGGCGCcacaaggCgCGCGGauaGCg -3'
miRNA:   3'- -GCGGgCGACCGCGag-----GgGCGCCg--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.