miRNA display CGI


Results 41 - 60 of 501 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 36425 0.66 0.898555
Target:  5'- cCCGGCUucGGCCC-CGGCUUCGgccccGGCu- -3'
miRNA:   3'- uGGCCGA--CUGGGcGUUGAAGU-----UCGcg -5'
6675 3' -55.8 NC_001847.1 + 45384 0.66 0.874982
Target:  5'- cGCCGGCgcgugcacGugCCGCAGCccgccaaaaaaggUCAAGaGCg -3'
miRNA:   3'- -UGGCCGa-------CugGGCGUUGa------------AGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 14396 0.67 0.861449
Target:  5'- cGCCGaGCUGgcgucgaggccccGCUCGCAGCgggUCGcgacugccucgacGGCGCc -3'
miRNA:   3'- -UGGC-CGAC-------------UGGGCGUUGa--AGU-------------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 37959 0.67 0.862987
Target:  5'- cACCGGUagccaUGGCCCGCGu------GCGCg -3'
miRNA:   3'- -UGGCCG-----ACUGGGCGUugaaguuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 28127 0.66 0.877892
Target:  5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3'
miRNA:   3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5'
6675 3' -55.8 NC_001847.1 + 95988 0.66 0.8919
Target:  5'- -gCGGCUGcgcgGCCgGCAGCgauuUUCGagccccAGCGCg -3'
miRNA:   3'- ugGCCGAC----UGGgCGUUG----AAGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 58393 0.66 0.898555
Target:  5'- uGCCGGCgGGCa-GCAGCUcuUCGuaGGCGa -3'
miRNA:   3'- -UGGCCGaCUGggCGUUGA--AGU--UCGCg -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 105644 0.66 0.885011
Target:  5'- gGCCGaaGCgccGCCCGCGGCcggaGAGCGUg -3'
miRNA:   3'- -UGGC--CGac-UGGGCGUUGaag-UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5277 0.66 0.885011
Target:  5'- uCCGGa-GACCCGgGgacggggguACggCGAGCGCg -3'
miRNA:   3'- uGGCCgaCUGGGCgU---------UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 79572 0.66 0.885011
Target:  5'- --gGGCgccgGGCUCGCGGCcucUUCGGGCGg -3'
miRNA:   3'- uggCCGa---CUGGGCGUUG---AAGUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 59113 0.66 0.889857
Target:  5'- cACCGGCaaGGCCaGCAcgaGCUUCcucuacaaccucaaGGGCGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGU---UGAAG--------------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 28381 0.66 0.8979
Target:  5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3'
miRNA:   3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 32192 0.66 0.870549
Target:  5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3'
miRNA:   3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 106381 0.66 0.870549
Target:  5'- gUCGGCgagaaGGCCCGCGucgGCacgCAcGCGCg -3'
miRNA:   3'- uGGCCGa----CUGGGCGU---UGaa-GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30368 0.66 0.877892
Target:  5'- cGCUGGC-GGCgCCGCccGGCgaggaCGAGCGCc -3'
miRNA:   3'- -UGGCCGaCUG-GGCG--UUGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 84540 0.67 0.862987
Target:  5'- cCCGGCgaagGcGCCCGCG---UCGcAGCGCu -3'
miRNA:   3'- uGGCCGa---C-UGGGCGUugaAGU-UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 86666 0.83 0.13483
Target:  5'- cGCCGcGCUcGACCCGC-GCUUUGAGCGCu -3'
miRNA:   3'- -UGGC-CGA-CUGGGCGuUGAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30655 0.67 0.860677
Target:  5'- cCCGagaaCUGGCCgCGCGACggcccggccgucgggCAGGCGCa -3'
miRNA:   3'- uGGCc---GACUGG-GCGUUGaa-------------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 115776 0.67 0.862987
Target:  5'- -gCGGC-GGCCCugGCcACcgUCGGGCGCg -3'
miRNA:   3'- ugGCCGaCUGGG--CGuUGa-AGUUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.