miRNA display CGI


Results 61 - 80 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 35961 0.66 0.557396
Target:  5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3'
miRNA:   3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 64472 0.66 0.577054
Target:  5'- -gGCGCgGGGGGCCgaagcagggaGCACAgagacGCCCGa- -3'
miRNA:   3'- ugCGCGgCUCUCGG----------CGUGU-----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 110686 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 110192 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 49591 0.66 0.577054
Target:  5'- gACG-GCCGAGGacauuuGCCGCGCAGuaggcgcgaguCCCGa- -3'
miRNA:   3'- -UGCgCGGCUCU------CGGCGUGUC-----------GGGCau -5'
6675 5' -62.6 NC_001847.1 + 387 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 60997 0.66 0.557396
Target:  5'- gGCGcCGUCGAG-GCCGCcauCGGCgCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCuCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 5626 0.66 0.577054
Target:  5'- -gGCGCCGcGGucCCGCGCgcgccaaagAGCCCGUc -3'
miRNA:   3'- ugCGCGGC-UCucGGCGUG---------UCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 32279 0.66 0.577054
Target:  5'- uCGCGCCGuccGcGUgGCGCGGCCCc-- -3'
miRNA:   3'- uGCGCGGCu--CuCGgCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 103742 0.66 0.577054
Target:  5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30479 0.66 0.577054
Target:  5'- -aGCGCUGGGAcGCgaucgGCGCGGCCCu-- -3'
miRNA:   3'- ugCGCGGCUCU-CGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 118933 0.66 0.56622
Target:  5'- cCGuCGCCcuucgcaGAcGGCCGCgaGCAGCCCGUc -3'
miRNA:   3'- uGC-GCGG-------CUcUCGGCG--UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 2877 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 105936 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 121650 0.66 0.577054
Target:  5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 33656 0.66 0.557396
Target:  5'- cGCGCGCgCGuG-GCCGC--GGCCCGc- -3'
miRNA:   3'- -UGCGCG-GCuCuCGGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 7873 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 101034 0.66 0.576067
Target:  5'- -gGCGCCGcAGGcuccgccGCCGCGCgAGCCaCGg- -3'
miRNA:   3'- ugCGCGGC-UCU-------CGGCGUG-UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 3421 0.66 0.577054
Target:  5'- -aGC-CCGGGGGCgccagGCGCAGCCCa-- -3'
miRNA:   3'- ugCGcGGCUCUCGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 1943 0.66 0.52829
Target:  5'- cGCGCGgCGcAGAGCUccuccagcgaGgGCAGCCCGc- -3'
miRNA:   3'- -UGCGCgGC-UCUCGG----------CgUGUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.