miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 61453 0.66 0.547638
Target:  5'- cACGCGCCG--GGCCGCGCcuucaucgauGGCgCGg- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUG----------UCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 44683 0.66 0.547638
Target:  5'- gGCGaGCCGcggauGGGCCGCGCGGaCCGc- -3'
miRNA:   3'- -UGCgCGGCu----CUCGGCGUGUCgGGCau -5'
6675 5' -62.6 NC_001847.1 + 28480 0.66 0.547638
Target:  5'- gACGCGCCGcGGAcGCCGC--GGCgCCGc- -3'
miRNA:   3'- -UGCGCGGC-UCU-CGGCGugUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 133520 0.66 0.537934
Target:  5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3'
miRNA:   3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 87430 0.66 0.557396
Target:  5'- cCGCGCuCGaAGAGCUGCugcgcgcgcucaACGGCCCc-- -3'
miRNA:   3'- uGCGCG-GC-UCUCGGCG------------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 60997 0.66 0.557396
Target:  5'- gGCGcCGUCGAG-GCCGCcauCGGCgCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCuCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 35961 0.66 0.557396
Target:  5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3'
miRNA:   3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 28204 0.66 0.547638
Target:  5'- uGCGCGCCac-GGCgGCGuuCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGcucUCGgCGU--GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 50970 0.66 0.567203
Target:  5'- cACGaCGCCcAGucGGCgGCGCAGCUCGa- -3'
miRNA:   3'- -UGC-GCGGcUC--UCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 77579 0.66 0.567203
Target:  5'- cCGCGCgGGccGAGCuCGCACGGCggcacCCGUu -3'
miRNA:   3'- uGCGCGgCU--CUCG-GCGUGUCG-----GGCAu -5'
6675 5' -62.6 NC_001847.1 + 103200 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105873 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 33656 0.66 0.557396
Target:  5'- cGCGCGCgCGuG-GCCGC--GGCCCGc- -3'
miRNA:   3'- -UGCGCG-GCuCuCGGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 46755 0.66 0.547638
Target:  5'- gGCGCGCCcgcccGCCGCGCggGGCCgGUc -3'
miRNA:   3'- -UGCGCGGcucu-CGGCGUG--UCGGgCAu -5'
6675 5' -62.6 NC_001847.1 + 90199 0.66 0.537934
Target:  5'- gGCGCGCC----GUCGCcCAGCCCGa- -3'
miRNA:   3'- -UGCGCGGcucuCGGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 130154 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132011 0.66 0.544721
Target:  5'- gGCGcCGCCGGGcucccggugcucucGGCCGCggcgggccGCGGCCUGc- -3'
miRNA:   3'- -UGC-GCGGCUC--------------UCGGCG--------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 7007 0.66 0.541808
Target:  5'- aACGCGaCGAGcGGCCGCGCAuccgccagcgccagcGCCaCGUc -3'
miRNA:   3'- -UGCGCgGCUC-UCGGCGUGU---------------CGG-GCAu -5'
6675 5' -62.6 NC_001847.1 + 131962 0.66 0.537934
Target:  5'- cUGCGCCGucgccuGCCGCgaggcgcuggagGCGGCCCGc- -3'
miRNA:   3'- uGCGCGGCucu---CGGCG------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 134903 0.66 0.537934
Target:  5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.