miRNA display CGI


Results 101 - 120 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 3060 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 29149 0.66 0.537934
Target:  5'- cUGCGCCGucgccuGCCGCgaggcgcuggagGCGGCCCGc- -3'
miRNA:   3'- uGCGCGGCucu---CGGCG------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 2877 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 35461 0.66 0.537934
Target:  5'- cCGCGCCGcGcGCCGCAaagcCAGCCUu-- -3'
miRNA:   3'- uGCGCGGCuCuCGGCGU----GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 82734 0.66 0.537934
Target:  5'- cGCGgGCCcAGcGCCuggaGCACGGCgCCGUAg -3'
miRNA:   3'- -UGCgCGGcUCuCGG----CGUGUCG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 27341 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 7379 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 11340 0.66 0.56622
Target:  5'- -gGCGCCG-GAGCgggagcacucguaCGCGCGGCCgCGc- -3'
miRNA:   3'- ugCGCGGCuCUCG-------------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 77579 0.66 0.567203
Target:  5'- cCGCGCgGGccGAGCuCGCACGGCggcacCCGUu -3'
miRNA:   3'- uGCGCGgCU--CUCG-GCGUGUCG-----GGCAu -5'
6675 5' -62.6 NC_001847.1 + 50970 0.66 0.567203
Target:  5'- cACGaCGCCcAGucGGCgGCGCAGCUCGa- -3'
miRNA:   3'- -UGC-GCGGcUC--UCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 118933 0.66 0.56622
Target:  5'- cCGuCGCCcuucgcaGAcGGCCGCgaGCAGCCCGUc -3'
miRNA:   3'- uGC-GCGG-------CUcUCGGCG--UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 21884 0.66 0.557396
Target:  5'- cGCGCuGCCGAG-GCCG---AGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCUCuCGGCgugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 85794 0.66 0.576067
Target:  5'- uGCGCGUCGAGGGUgcgggcgCGUGCAGCgaCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCG-------GCGUGUCGg-GCau -5'
6675 5' -62.6 NC_001847.1 + 105936 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 30479 0.66 0.577054
Target:  5'- -aGCGCUGGGAcGCgaucgGCGCGGCCCu-- -3'
miRNA:   3'- ugCGCGGCUCU-CGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 67976 0.66 0.577054
Target:  5'- uCGcCGCCGAGAG-CGgGgGGCCUGUc -3'
miRNA:   3'- uGC-GCGGCUCUCgGCgUgUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 114991 0.66 0.547638
Target:  5'- -aGCGCCGAGu-CCGCAuCGGgCCGa- -3'
miRNA:   3'- ugCGCGGCUCucGGCGU-GUCgGGCau -5'
6675 5' -62.6 NC_001847.1 + 38945 0.66 0.556418
Target:  5'- cCGgGcCCGGGGGCCGCgagcgccauggcgGCGGCCgCGg- -3'
miRNA:   3'- uGCgC-GGCUCUCGGCG-------------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 42891 0.66 0.557396
Target:  5'- cCGCGCCaaGAgcgcGAGCUGCAgCGGCUCGa- -3'
miRNA:   3'- uGCGCGG--CU----CUCGGCGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 28884 0.66 0.537934
Target:  5'- aACGCGCUGuGGgcgcuGCCGCACguggcGGCCUGc- -3'
miRNA:   3'- -UGCGCGGCuCU-----CGGCGUG-----UCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.