miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 94147 0.74 0.176034
Target:  5'- cACGaCGCCG-GAGCaggugaGCGCGGCCCGg- -3'
miRNA:   3'- -UGC-GCGGCuCUCGg-----CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 46544 0.74 0.184427
Target:  5'- gGCGCGCgCGAGguccuccAGCCGCGCGGCCg--- -3'
miRNA:   3'- -UGCGCG-GCUC-------UCGGCGUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 30815 0.74 0.184878
Target:  5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 28338 0.74 0.189446
Target:  5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3'
miRNA:   3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29027 0.74 0.194113
Target:  5'- uCGCGCCcAGAGCCGCGC-GCgCCGg- -3'
miRNA:   3'- uGCGCGGcUCUCGGCGUGuCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 133628 0.74 0.184878
Target:  5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 96916 0.74 0.19888
Target:  5'- gGCG-GCCGcguAGAGgCGCGCGGCCCGg- -3'
miRNA:   3'- -UGCgCGGC---UCUCgGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 41367 0.74 0.180408
Target:  5'- uGCGCGCCGAGAG-CGCACGucacGCUCGc- -3'
miRNA:   3'- -UGCGCGGCUCUCgGCGUGU----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 87284 0.74 0.180408
Target:  5'- uGCGCGCCGAcGGCC-CGCGGCCgCGg- -3'
miRNA:   3'- -UGCGCGGCUcUCGGcGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 36348 0.74 0.179086
Target:  5'- cGCGCGCCGcggcgcgcgcacgcGGcGCCGcCGCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGC--------------UCuCGGC-GUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3377 0.74 0.176034
Target:  5'- cGCGCGCCGA--GCCGCGCaaAGCCCu-- -3'
miRNA:   3'- -UGCGCGGCUcuCGGCGUG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132189 0.74 0.176034
Target:  5'- uGCGCGCCGAGgcGGCCGCcgcgcuggagGCGGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUC--UCGGCG----------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 59507 0.74 0.176034
Target:  5'- gUGCGCCGAG-GCCGCAcCGGCuuGg- -3'
miRNA:   3'- uGCGCGGCUCuCGGCGU-GUCGggCau -5'
6675 5' -62.6 NC_001847.1 + 131151 0.74 0.189446
Target:  5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3'
miRNA:   3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 42116 0.73 0.223734
Target:  5'- -gGCGCCGGGGGCCGCuucccGCguuggcgagagcuGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUCUCGGCG-----UG-------------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105805 0.73 0.208721
Target:  5'- cGCGCGCUG-GAGCCGCGCGcGCuCCa-- -3'
miRNA:   3'- -UGCGCGGCuCUCGGCGUGU-CG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 49961 0.73 0.229664
Target:  5'- -gGCGCCGAGua-CGCGCAGgCCGUGc -3'
miRNA:   3'- ugCGCGGCUCucgGCGUGUCgGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 890 0.73 0.229664
Target:  5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3'
miRNA:   3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 78874 0.73 0.229664
Target:  5'- uGCGCGCCc----UCGCGCAGCCCGUAa -3'
miRNA:   3'- -UGCGCGGcucucGGCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 28524 0.73 0.224267
Target:  5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.