Results 61 - 80 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 28524 | 0.73 | 0.224267 |
Target: 5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3' miRNA: 3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3868 | 0.73 | 0.208721 |
Target: 5'- -gGCGCCG-GGGCUGCGCAGCUCc-- -3' miRNA: 3'- ugCGCGGCuCUCGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 74388 | 0.73 | 0.213797 |
Target: 5'- -gGCGCUGGGGGaCCGCGCGGCCg--- -3' miRNA: 3'- ugCGCGGCUCUC-GGCGUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 36435 | 0.73 | 0.23517 |
Target: 5'- cGCGCGCCGuAGcGGCgCGCGCGGCgCGg- -3' miRNA: 3'- -UGCGCGGC-UC-UCG-GCGUGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 103703 | 0.73 | 0.229664 |
Target: 5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3' miRNA: 3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59861 | 0.73 | 0.229664 |
Target: 5'- gGCGCggucGCCGAGGGCCggcGCGCGGCCUc-- -3' miRNA: 3'- -UGCG----CGGCUCUCGG---CGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 4170 | 0.73 | 0.229664 |
Target: 5'- aGCGgGCCuuguuuuGGGCCGCGC-GCCCGUGg -3' miRNA: 3'- -UGCgCGGcu-----CUCGGCGUGuCGGGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 99846 | 0.73 | 0.213797 |
Target: 5'- cGCGCGCCGcucggcGGGGCUGCGCAGUaCGUu -3' miRNA: 3'- -UGCGCGGC------UCUCGGCGUGUCGgGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131337 | 0.73 | 0.224267 |
Target: 5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3' miRNA: 3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 81422 | 0.73 | 0.224267 |
Target: 5'- cGCGCGCCGAuccgccccgcGAGCCGCcgGCGGCgCGc- -3' miRNA: 3'- -UGCGCGGCU----------CUCGGCG--UGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 14003 | 0.73 | 0.215857 |
Target: 5'- aACGCGCCGAGAgcacggcagcaggcgGCgGCGCAGCgCGc- -3' miRNA: 3'- -UGCGCGGCUCU---------------CGgCGUGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 42116 | 0.73 | 0.223734 |
Target: 5'- -gGCGCCGGGGGCCGCuucccGCguuggcgagagcuGGCCCGg- -3' miRNA: 3'- ugCGCGGCUCUCGGCG-----UG-------------UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59324 | 0.72 | 0.240786 |
Target: 5'- -gGCGCCGGcGGcGCCGUAcCAGCCCGg- -3' miRNA: 3'- ugCGCGGCU-CU-CGGCGU-GUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 56840 | 0.72 | 0.262544 |
Target: 5'- cGCGCGCCGc--GCCGCGCcgucugcgcccggcGGCCCGg- -3' miRNA: 3'- -UGCGCGGCucuCGGCGUG--------------UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 96849 | 0.72 | 0.270559 |
Target: 5'- gGCGCGUCGGGGGCgGCggugggcgGCGGUCCGc- -3' miRNA: 3'- -UGCGCGGCUCUCGgCG--------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 134008 | 0.72 | 0.264376 |
Target: 5'- cGCGCGCCGAGGcGCCGC-C-GCUgGUGc -3' miRNA: 3'- -UGCGCGGCUCU-CGGCGuGuCGGgCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 33234 | 0.72 | 0.266836 |
Target: 5'- cCGCGCCGGGcGCCGCggcgccuccgcugccGCGGUCCGc- -3' miRNA: 3'- uGCGCGGCUCuCGGCG---------------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 5212 | 0.72 | 0.270559 |
Target: 5'- aGCGCGCCGcgacGGaAGCUGCGCAugGCuCCGUGc -3' miRNA: 3'- -UGCGCGGC----UC-UCGGCGUGU--CG-GGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 4239 | 0.72 | 0.270559 |
Target: 5'- cGCGCGCCGGcacGAGCUGCgccaGCAGCCaGUc -3' miRNA: 3'- -UGCGCGGCU---CUCGGCG----UGUCGGgCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 94227 | 0.72 | 0.270559 |
Target: 5'- uCGCGgCGGGGcGcCCGCGCGGCgCCGUGg -3' miRNA: 3'- uGCGCgGCUCU-C-GGCGUGUCG-GGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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