miRNA display CGI


Results 61 - 80 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 81422 0.73 0.224267
Target:  5'- cGCGCGCCGAuccgccccgcGAGCCGCcgGCGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCU----------CUCGGCG--UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 131337 0.73 0.224267
Target:  5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5'
6675 5' -62.6 NC_001847.1 + 28524 0.73 0.224267
Target:  5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5'
6675 5' -62.6 NC_001847.1 + 128643 0.73 0.229664
Target:  5'- aGCGCGCCGGcGAcGCCGCuaccuacgaccuGCAGgCCGUGc -3'
miRNA:   3'- -UGCGCGGCU-CU-CGGCG------------UGUCgGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 78874 0.73 0.229664
Target:  5'- uGCGCGCCc----UCGCGCAGCCCGUAa -3'
miRNA:   3'- -UGCGCGGcucucGGCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 890 0.73 0.229664
Target:  5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3'
miRNA:   3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 49961 0.73 0.229664
Target:  5'- -gGCGCCGAGua-CGCGCAGgCCGUGc -3'
miRNA:   3'- ugCGCGGCUCucgGCGUGUCgGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 59861 0.73 0.229664
Target:  5'- gGCGCggucGCCGAGGGCCggcGCGCGGCCUc-- -3'
miRNA:   3'- -UGCG----CGGCUCUCGG---CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 103703 0.73 0.229664
Target:  5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3'
miRNA:   3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 4170 0.73 0.229664
Target:  5'- aGCGgGCCuuguuuuGGGCCGCGC-GCCCGUGg -3'
miRNA:   3'- -UGCgCGGcu-----CUCGGCGUGuCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 30903 0.73 0.234614
Target:  5'- cACGCGCCu-GGGcCCGCGCAccgcgguGCCCGUGc -3'
miRNA:   3'- -UGCGCGGcuCUC-GGCGUGU-------CGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 36435 0.73 0.23517
Target:  5'- cGCGCGCCGuAGcGGCgCGCGCGGCgCGg- -3'
miRNA:   3'- -UGCGCGGC-UC-UCG-GCGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 64070 0.72 0.240786
Target:  5'- cGCGCcgGCCGAGcGCCGC-CAGCaCCGg- -3'
miRNA:   3'- -UGCG--CGGCUCuCGGCGuGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 99290 0.72 0.240786
Target:  5'- aGCGCGUCGAGguggcgccucAGCuCGCGCAGCgCGUc -3'
miRNA:   3'- -UGCGCGGCUC----------UCG-GCGUGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 54055 0.72 0.240786
Target:  5'- cGCGCGgCGAGGccGCCGC-CAGCgCCGUc -3'
miRNA:   3'- -UGCGCgGCUCU--CGGCGuGUCG-GGCAu -5'
6675 5' -62.6 NC_001847.1 + 59324 0.72 0.240786
Target:  5'- -gGCGCCGGcGGcGCCGUAcCAGCCCGg- -3'
miRNA:   3'- ugCGCGGCU-CU-CGGCGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 79066 0.72 0.240786
Target:  5'- -gGCGCCG-GAGCCGgGCGcgugcgacguguGCCCGUGc -3'
miRNA:   3'- ugCGCGGCuCUCGGCgUGU------------CGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 71872 0.72 0.240786
Target:  5'- aGCG-GCCGcGAG-CGCGCGGCCCGUu -3'
miRNA:   3'- -UGCgCGGCuCUCgGCGUGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 3277 0.72 0.246514
Target:  5'- cGCGCgGCCGGcGAGCacggCGCGCAGCUCGg- -3'
miRNA:   3'- -UGCG-CGGCU-CUCG----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 89992 0.72 0.246514
Target:  5'- uGCGCGCCGcGGGGCUGCACcccgcagaaGGCgCCGa- -3'
miRNA:   3'- -UGCGCGGC-UCUCGGCGUG---------UCG-GGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.