miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 106090 0.72 0.246514
Target:  5'- cGCGCgGCCGGcGAGCacggCGCGCAGCUCGg- -3'
miRNA:   3'- -UGCG-CGGCU-CUCG----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 41391 0.72 0.252355
Target:  5'- cCGcCGCCGGcAGCCGCGCGGCCUc-- -3'
miRNA:   3'- uGC-GCGGCUcUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 98921 0.72 0.252355
Target:  5'- uGCGCGUCGAaGGCCGCcaggagggcgcGCAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCUcUCGGCG-----------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 124567 0.72 0.252355
Target:  5'- cGCGCGCgGGgGGGCCGC-CGGCgCCGg- -3'
miRNA:   3'- -UGCGCGgCU-CUCGGCGuGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 21754 0.72 0.252355
Target:  5'- cGCGCGCgGGgGGGCCGC-CGGCgCCGg- -3'
miRNA:   3'- -UGCGCGgCU-CUCGGCGuGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 76402 0.72 0.252355
Target:  5'- -gGCGCCGGGGGCCGCgGCGGgggcacCCCGc- -3'
miRNA:   3'- ugCGCGGCUCUCGGCG-UGUC------GGGCau -5'
6675 5' -62.6 NC_001847.1 + 21357 0.72 0.252355
Target:  5'- uGCGCGCCGucggcggcucGGGCCGCcucggGCGGCUCGUc -3'
miRNA:   3'- -UGCGCGGCu---------CUCGGCG-----UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 56496 0.72 0.254722
Target:  5'- cUGCGagaCGAGAGCCGCgggaacuuccgcuucACGGCCCGc- -3'
miRNA:   3'- uGCGCg--GCUCUCGGCG---------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 104782 0.72 0.258308
Target:  5'- -aGCGCCGAGGGCCcgccagcaacgcGCGguGCUCGUc -3'
miRNA:   3'- ugCGCGGCUCUCGG------------CGUguCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 125070 0.72 0.258308
Target:  5'- cGCGCGCgGcGGGgCGCugGGCCCGc- -3'
miRNA:   3'- -UGCGCGgCuCUCgGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 102602 0.72 0.258308
Target:  5'- -aGCGCCGAGGGCUGCGCGcGCaUCGc- -3'
miRNA:   3'- ugCGCGGCUCUCGGCGUGU-CG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 56840 0.72 0.262544
Target:  5'- cGCGCGCCGc--GCCGCGCcgucugcgcccggcGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUG--------------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 134008 0.72 0.264376
Target:  5'- cGCGCGCCGAGGcGCCGC-C-GCUgGUGc -3'
miRNA:   3'- -UGCGCGGCUCU-CGGCGuGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 1788 0.72 0.264376
Target:  5'- cCGCGUCGAGAGCagcaGCAC-GCCCu-- -3'
miRNA:   3'- uGCGCGGCUCUCGg---CGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 73109 0.72 0.264376
Target:  5'- uGCGCacagucaacGCCGGGAGCCGCAUacggccgcagGGCCCc-- -3'
miRNA:   3'- -UGCG---------CGGCUCUCGGCGUG----------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 104601 0.72 0.264376
Target:  5'- cCGCGUCGAGAGCagcaGCAC-GCCCu-- -3'
miRNA:   3'- uGCGCGGCUCUCGg---CGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 31195 0.72 0.264376
Target:  5'- cGCGCGCCGAGGcGCCGC-C-GCUgGUGc -3'
miRNA:   3'- -UGCGCGGCUCU-CGGCGuGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 33234 0.72 0.266836
Target:  5'- cCGCGCCGGGcGCCGCggcgccuccgcugccGCGGUCCGc- -3'
miRNA:   3'- uGCGCGGCUCuCGGCG---------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 19003 0.72 0.269936
Target:  5'- -aGCGCCucGGGCCGCGCGccccagcGCCCGg- -3'
miRNA:   3'- ugCGCGGcuCUCGGCGUGU-------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 4239 0.72 0.270559
Target:  5'- cGCGCGCCGGcacGAGCUGCgccaGCAGCCaGUc -3'
miRNA:   3'- -UGCGCGGCU---CUCGGCG----UGUCGGgCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.