miRNA display CGI


Results 101 - 120 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 5212 0.72 0.270559
Target:  5'- aGCGCGCCGcgacGGaAGCUGCGCAugGCuCCGUGc -3'
miRNA:   3'- -UGCGCGGC----UC-UCGGCGUGU--CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 96849 0.72 0.270559
Target:  5'- gGCGCGUCGGGGGCgGCggugggcgGCGGUCCGc- -3'
miRNA:   3'- -UGCGCGGCUCUCGgCG--------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 94227 0.72 0.270559
Target:  5'- uCGCGgCGGGGcGcCCGCGCGGCgCCGUGg -3'
miRNA:   3'- uGCGCgGCUCU-C-GGCGUGUCG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 104652 0.72 0.270559
Target:  5'- cGCGCGcCCGAGGGCCGCGCcgaucgcGUCCc-- -3'
miRNA:   3'- -UGCGC-GGCUCUCGGCGUGu------CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 69622 0.71 0.276858
Target:  5'- gGCGCgGCCGGGcGGCCGCACuGCgCGc- -3'
miRNA:   3'- -UGCG-CGGCUC-UCGGCGUGuCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 89063 0.71 0.276858
Target:  5'- gGCGCGCCGGGuuucGGCgGCGCucuuucGCCCGc- -3'
miRNA:   3'- -UGCGCGGCUC----UCGgCGUGu-----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 100370 0.71 0.276858
Target:  5'- cGCGCGCCGcGGccgcggcgcgcAGCCGCGCcAGCUCGg- -3'
miRNA:   3'- -UGCGCGGC-UC-----------UCGGCGUG-UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 58786 0.71 0.276858
Target:  5'- -gGCGaCCGGGGuCCGCcccgGCGGCCCGUAg -3'
miRNA:   3'- ugCGC-GGCUCUcGGCG----UGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 30541 0.71 0.276858
Target:  5'- gACGuCGCCGAGcucGUCGCGCGGCuCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCu--CGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 88325 0.71 0.276858
Target:  5'- uGCGCGCUuu-AGCCGCGCGGgCCUGUGc -3'
miRNA:   3'- -UGCGCGGcucUCGGCGUGUC-GGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 42958 0.71 0.283274
Target:  5'- cGCGCGCgGGGggggcgGGCCGCcggcCGGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC------UCGGCGu---GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 92236 0.71 0.283274
Target:  5'- cGCGCGCUcucGAGCCGCcuGCAGCUCGc- -3'
miRNA:   3'- -UGCGCGGcu-CUCGGCG--UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 43648 0.71 0.283274
Target:  5'- gACGCGCgCGAGGGCuCGggUGGCCCGc- -3'
miRNA:   3'- -UGCGCG-GCUCUCG-GCguGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 41735 0.71 0.289806
Target:  5'- -aGCGCCGuGcGCUGCACGGagaCCGUGa -3'
miRNA:   3'- ugCGCGGCuCuCGGCGUGUCg--GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 28616 0.71 0.289806
Target:  5'- cGCGCGCuacgCGGcGGCCGCGgGGCCCGc- -3'
miRNA:   3'- -UGCGCG----GCUcUCGGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 98770 0.71 0.289806
Target:  5'- cGCGCGCUGcccGGGCCGCGgCGGCgCCGc- -3'
miRNA:   3'- -UGCGCGGCu--CUCGGCGU-GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 10389 0.71 0.289806
Target:  5'- uCGCGgCG-GGGCCGCuuuaugACGGCCCGUc -3'
miRNA:   3'- uGCGCgGCuCUCGGCG------UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 36110 0.71 0.289806
Target:  5'- gACGCGCUGGGcgccuuccacgaAGCCGCGCGcGCCgCGg- -3'
miRNA:   3'- -UGCGCGGCUC------------UCGGCGUGU-CGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 104373 0.71 0.289806
Target:  5'- gACGCGCCGcGAgGCCaGCACGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCuCU-CGG-CGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 1560 0.71 0.289806
Target:  5'- gACGCGCCGcGAgGCCaGCACGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCuCU-CGG-CGUGUCGgGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.