Results 81 - 100 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 29198 | 0.66 | 0.544721 |
Target: 5'- gGCGcCGCCGGGcucccggugcucucGGCCGCggcgggccGCGGCCUGc- -3' miRNA: 3'- -UGC-GCGGCUC--------------UCGGCG--------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 7007 | 0.66 | 0.541808 |
Target: 5'- aACGCGaCGAGcGGCCGCGCAuccgccagcgccagcGCCaCGUc -3' miRNA: 3'- -UGCGCgGCUC-UCGGCGUGU---------------CGG-GCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 130154 | 0.66 | 0.537934 |
Target: 5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3' miRNA: 3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131697 | 0.66 | 0.537934 |
Target: 5'- aACGCGCUGuGGgcgcuGCCGCACguggcGGCCUGc- -3' miRNA: 3'- -UGCGCGGCuCU-----CGGCGUG-----UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 134903 | 0.66 | 0.537934 |
Target: 5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3' miRNA: 3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 90199 | 0.66 | 0.537934 |
Target: 5'- gGCGCGCC----GUCGCcCAGCCCGa- -3' miRNA: 3'- -UGCGCGGcucuCGGCGuGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131962 | 0.66 | 0.537934 |
Target: 5'- cUGCGCCGucgccuGCCGCgaggcgcuggagGCGGCCCGc- -3' miRNA: 3'- uGCGCGGCucu---CGGCG------------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 70304 | 0.66 | 0.537934 |
Target: 5'- gGCGCGCCGcgcuggucucGGAGCUGaagcGCCCGg- -3' miRNA: 3'- -UGCGCGGC----------UCUCGGCguguCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 60236 | 0.66 | 0.537934 |
Target: 5'- uCGuCGgCGAGGGCUaGCACGGCgCCGa- -3' miRNA: 3'- uGC-GCgGCUCUCGG-CGUGUCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 30151 | 0.66 | 0.537934 |
Target: 5'- gGCGCGCCGuGcGCC-CugGGUgCGUGg -3' miRNA: 3'- -UGCGCGGCuCuCGGcGugUCGgGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 93077 | 0.66 | 0.537934 |
Target: 5'- gAUGCGCCGc-AGCgGCAcCAGCCCc-- -3' miRNA: 3'- -UGCGCGGCucUCGgCGU-GUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 133520 | 0.66 | 0.537934 |
Target: 5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3' miRNA: 3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 113007 | 0.66 | 0.537934 |
Target: 5'- uGCGCGCCGcc-GCCGCcGCcgGGCCCa-- -3' miRNA: 3'- -UGCGCGGCucuCGGCG-UG--UCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132071 | 0.66 | 0.537934 |
Target: 5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3' miRNA: 3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 78986 | 0.66 | 0.537934 |
Target: 5'- gGCGUGCuCGGGcGGCUGCugAGCCa--- -3' miRNA: 3'- -UGCGCG-GCUC-UCGGCGugUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 80773 | 0.66 | 0.537934 |
Target: 5'- cGCcCGCCGcAGcAGCuCGCGCAGCgCGUc -3' miRNA: 3'- -UGcGCGGC-UC-UCG-GCGUGUCGgGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 122833 | 0.66 | 0.537934 |
Target: 5'- gGCGCGCCcaccGGGcCCGCGCccuGGCuuGUGg -3' miRNA: 3'- -UGCGCGGcu--CUC-GGCGUG---UCGggCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 27341 | 0.66 | 0.537934 |
Target: 5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3' miRNA: 3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 105873 | 0.66 | 0.537934 |
Target: 5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3' miRNA: 3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59605 | 0.66 | 0.537934 |
Target: 5'- gGC-CGCCGAGA-UCGCGCGGUgcgCCGUGc -3' miRNA: 3'- -UGcGCGGCUCUcGGCGUGUCG---GGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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