miRNA display CGI


Results 61 - 80 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 13395 0.66 0.570154
Target:  5'- gGCGCGCCGcGGGCCcugggagaaagacggGCGCGccagcgcGCgCCGUGa -3'
miRNA:   3'- -UGCGCGGCuCUCGG---------------CGUGU-------CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 13882 0.67 0.471945
Target:  5'- gGCGCcuuugGCCGGGAGCC-CAguGCCaCGa- -3'
miRNA:   3'- -UGCG-----CGGCUCUCGGcGUguCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 13944 0.68 0.453839
Target:  5'- cAUGCGC---GAGCUGCggcuGCGGCCCGUGg -3'
miRNA:   3'- -UGCGCGgcuCUCGGCG----UGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 14003 0.73 0.215857
Target:  5'- aACGCGCCGAGAgcacggcagcaggcgGCgGCGCAGCgCGc- -3'
miRNA:   3'- -UGCGCGGCUCU---------------CGgCGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 14036 0.69 0.384645
Target:  5'- gGCGCuggucgGCCGcGAGCCGCuagguucGCGGCCgGUGc -3'
miRNA:   3'- -UGCG------CGGCuCUCGGCG-------UGUCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 14444 0.75 0.167568
Target:  5'- -gGCGCCGAGcgcgcGGCCGCGCuGCUCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 14447 0.66 0.567203
Target:  5'- -gGCGCCGGGG--UGCGCGGCCgCGg- -3'
miRNA:   3'- ugCGCGGCUCUcgGCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 15002 0.68 0.462845
Target:  5'- aGCGCcccucgGCCGcgguGGGGCCGCGCgAGCCgCGg- -3'
miRNA:   3'- -UGCG------CGGC----UCUCGGCGUG-UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 15238 0.69 0.410301
Target:  5'- uACGCGCCGGcGGCgGCGgCGGCCaCGc- -3'
miRNA:   3'- -UGCGCGGCUcUCGgCGU-GUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 15558 0.68 0.46194
Target:  5'- cGCGCgGCCGucGGGCCGCggccgccGCuGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCu-CUCGGCG-------UGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 15864 0.69 0.367094
Target:  5'- cGCGCGUCGGuacuggcccucgacGAGCCGCGCgGGCgCCGc- -3'
miRNA:   3'- -UGCGCGGCU--------------CUCGGCGUG-UCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 15889 0.69 0.385456
Target:  5'- -aGCGCCGAcGAGCuCGCuaucgACGGCCCc-- -3'
miRNA:   3'- ugCGCGGCU-CUCG-GCG-----UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 16008 0.69 0.401909
Target:  5'- -gGCGCCGAcGAGCuCGCcaucgACGGCCCc-- -3'
miRNA:   3'- ugCGCGGCU-CUCG-GCG-----UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 16727 0.68 0.436117
Target:  5'- -gGCGCCGAGA-CCGCaggcgACGGCCaCGa- -3'
miRNA:   3'- ugCGCGGCUCUcGGCG-----UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 18546 0.68 0.436117
Target:  5'- cCGCGCCGcAGAGCggcaGCGCugcGCCCa-- -3'
miRNA:   3'- uGCGCGGC-UCUCGg---CGUGu--CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 18711 0.66 0.567203
Target:  5'- -aGCGCCcaccgcccucGAGCCcaagcGCGCGGCCCGg- -3'
miRNA:   3'- ugCGCGGcu--------CUCGG-----CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 19003 0.72 0.269936
Target:  5'- -aGCGCCucGGGCCGCGCGccccagcGCCCGg- -3'
miRNA:   3'- ugCGCGGcuCUCGGCGUGU-------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 19346 0.7 0.33148
Target:  5'- aGCGCGC--GGAGCCGCAgCGGCuCCGc- -3'
miRNA:   3'- -UGCGCGgcUCUCGGCGU-GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 19433 0.67 0.509201
Target:  5'- -aGCGCCaaaGGCCGCGC-GCCCGc- -3'
miRNA:   3'- ugCGCGGcucUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 21357 0.72 0.252355
Target:  5'- uGCGCGCCGucggcggcucGGGCCGCcucggGCGGCUCGUc -3'
miRNA:   3'- -UGCGCGGCu---------CUCGGCG-----UGUCGGGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.