miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 21510 0.76 0.137252
Target:  5'- gGCGCGCCucggcGGGGGCCGCGCGGgCCa-- -3'
miRNA:   3'- -UGCGCGG-----CUCUCGGCGUGUCgGGcau -5'
6675 5' -62.6 NC_001847.1 + 21579 0.67 0.499766
Target:  5'- gGCGgGagaGGGGGCCGCGgGGCCCc-- -3'
miRNA:   3'- -UGCgCgg-CUCUCGGCGUgUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 21754 0.72 0.252355
Target:  5'- cGCGCGCgGGgGGGCCGC-CGGCgCCGg- -3'
miRNA:   3'- -UGCGCGgCU-CUCGGCGuGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 21884 0.66 0.557396
Target:  5'- cGCGCuGCCGAG-GCCG---AGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCUCuCGGCgugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 22104 0.77 0.120948
Target:  5'- gGCGCGCCGGGGGCgacagcgggCGCGCccugGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCG---------GCGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 23314 0.67 0.490408
Target:  5'- -gGCGCCGcuGAGCCGCGCcacGUCCu-- -3'
miRNA:   3'- ugCGCGGCu-CUCGGCGUGu--CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 23859 0.7 0.353914
Target:  5'- cCG-GCCGAGcGCCGCcccCGGCCCGg- -3'
miRNA:   3'- uGCgCGGCUCuCGGCGu--GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 25694 0.67 0.509201
Target:  5'- cACGaccuCGCCGAcguaAGCCGCcacuGCGGCCCGa- -3'
miRNA:   3'- -UGC----GCGGCUc---UCGGCG----UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 26745 0.67 0.471945
Target:  5'- cACGUggGCCGuAGAGCgcgggUGCGCGGCCUGg- -3'
miRNA:   3'- -UGCG--CGGC-UCUCG-----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 27101 0.68 0.462845
Target:  5'- gGCGuCGCCGAG-GUCGCGCcaAGCCUc-- -3'
miRNA:   3'- -UGC-GCGGCUCuCGGCGUG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 27213 0.69 0.375003
Target:  5'- gGCGCGCCGGGgcgcucgagcugcgGGUCGCAaaAGUCCGUc -3'
miRNA:   3'- -UGCGCGGCUC--------------UCGGCGUg-UCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 27341 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 27552 0.67 0.509201
Target:  5'- gGCGCggcgGCUGGGAGCCGCAUccGCaaGUGg -3'
miRNA:   3'- -UGCG----CGGCUCUCGGCGUGu-CGggCAU- -5'
6675 5' -62.6 NC_001847.1 + 27684 0.67 0.471945
Target:  5'- gGCGCGUCGGgcuGAGgCGCGCgAGCgCCGg- -3'
miRNA:   3'- -UGCGCGGCU---CUCgGCGUG-UCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 27875 0.68 0.451156
Target:  5'- cCGCGCuCGAGcgguuggauggcgaGGUCGC-CGGCCCGg- -3'
miRNA:   3'- uGCGCG-GCUC--------------UCGGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 27986 0.67 0.490408
Target:  5'- -gGCGCCGcgcuGGGCCGCgcuGCAGCgCGc- -3'
miRNA:   3'- ugCGCGGCu---CUCGGCG---UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 28204 0.66 0.547638
Target:  5'- uGCGCGCCac-GGCgGCGuuCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGcucUCGgCGU--GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 28338 0.74 0.189446
Target:  5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3'
miRNA:   3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 28480 0.66 0.547638
Target:  5'- gACGCGCCGcGGAcGCCGC--GGCgCCGc- -3'
miRNA:   3'- -UGCGCGGC-UCU-CGGCGugUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 28524 0.73 0.224267
Target:  5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.