miRNA display CGI


Results 101 - 120 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 28616 0.71 0.289806
Target:  5'- cGCGCGCuacgCGGcGGCCGCGgGGCCCGc- -3'
miRNA:   3'- -UGCGCG----GCUcUCGGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 28884 0.66 0.537934
Target:  5'- aACGCGCUGuGGgcgcuGCCGCACguggcGGCCUGc- -3'
miRNA:   3'- -UGCGCGGCuCU-----CGGCGUG-----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29027 0.74 0.194113
Target:  5'- uCGCGCCcAGAGCCGCGC-GCgCCGg- -3'
miRNA:   3'- uGCGCGGcUCUCGGCGUGuCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 29052 0.77 0.112049
Target:  5'- uGCGCGCCGuGcucgccGGCCGCGCGGCgCCGg- -3'
miRNA:   3'- -UGCGCGGCuC------UCGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 29149 0.66 0.537934
Target:  5'- cUGCGCCGucgccuGCCGCgaggcgcuggagGCGGCCCGc- -3'
miRNA:   3'- uGCGCGGCucu---CGGCG------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29198 0.66 0.544721
Target:  5'- gGCGcCGCCGGGcucccggugcucucGGCCGCggcgggccGCGGCCUGc- -3'
miRNA:   3'- -UGC-GCGGCUC--------------UCGGCG--------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29258 0.66 0.537934
Target:  5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3'
miRNA:   3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29302 0.69 0.385456
Target:  5'- gGC-CGCCGAGcuGCUcgGCGCGGCCCGc- -3'
miRNA:   3'- -UGcGCGGCUCu-CGG--CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29330 0.66 0.567203
Target:  5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3'
miRNA:   3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 29376 0.74 0.176034
Target:  5'- uGCGCGCCGAGgcGGCCGCcgcgcuggagGCGGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUC--UCGGCG----------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 29439 0.66 0.557396
Target:  5'- -aGCGCUGGGGcGUgGCGCcGCCCGc- -3'
miRNA:   3'- ugCGCGGCUCU-CGgCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29527 0.67 0.471945
Target:  5'- gGCGCgGCUGGcGGCCGCgcucGCGGCCCu-- -3'
miRNA:   3'- -UGCG-CGGCUcUCGGCG----UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 29636 0.68 0.462845
Target:  5'- -aGgGCCGGGGcGCCGCggGCGGaCCCGg- -3'
miRNA:   3'- ugCgCGGCUCU-CGGCG--UGUC-GGGCau -5'
6675 5' -62.6 NC_001847.1 + 29994 0.79 0.091228
Target:  5'- gGCGCGgCGGGAGCCGcCGCuGCCCGc- -3'
miRNA:   3'- -UGCGCgGCUCUCGGC-GUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30022 0.69 0.385456
Target:  5'- cGCGUGCUGGGGcccauGCCGCccgGCGGCCCc-- -3'
miRNA:   3'- -UGCGCGGCUCU-----CGGCG---UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 30138 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30151 0.66 0.537934
Target:  5'- gGCGCGCCGuGcGCC-CugGGUgCGUGg -3'
miRNA:   3'- -UGCGCGGCuCuCGGcGugUCGgGCAU- -5'
6675 5' -62.6 NC_001847.1 + 30212 0.83 0.0474
Target:  5'- cGCGCGCCGA-AGCCGCGCGcGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUcUCGGCGUGU-CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30219 0.7 0.346318
Target:  5'- gGCGCugGCCGAGAucgcggcccgccGCCGCGCgGGCCCc-- -3'
miRNA:   3'- -UGCG--CGGCUCU------------CGGCGUG-UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 30479 0.66 0.577054
Target:  5'- -aGCGCUGGGAcGCgaucgGCGCGGCCCu-- -3'
miRNA:   3'- ugCGCGGCUCU-CGg----CGUGUCGGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.