miRNA display CGI


Results 121 - 140 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 30511 0.67 0.471945
Target:  5'- gGCGCGCCGGacguGAGCgCGCuCGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCU----CUCG-GCGuGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 30541 0.71 0.276858
Target:  5'- gACGuCGCCGAGcucGUCGCGCGGCuCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCu--CGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 30609 0.68 0.444928
Target:  5'- -gGCcCCGGGGccGCCGCGCAGCgCCGc- -3'
miRNA:   3'- ugCGcGGCUCU--CGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 30643 0.67 0.481133
Target:  5'- gACGCcguggaccCCGAGAacugGCCGCGCgacGGCCCGg- -3'
miRNA:   3'- -UGCGc-------GGCUCU----CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30707 0.66 0.537934
Target:  5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3'
miRNA:   3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30767 0.69 0.385456
Target:  5'- cGCGCGCCGuGcuGGCCuCGCGGCgCGUc -3'
miRNA:   3'- -UGCGCGGCuC--UCGGcGUGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 30815 0.74 0.184878
Target:  5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 30903 0.73 0.234614
Target:  5'- cACGCGCCu-GGGcCCGCGCAccgcgguGCCCGUGc -3'
miRNA:   3'- -UGCGCGGcuCUC-GGCGUGU-------CGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 31090 0.69 0.377398
Target:  5'- gACGCGgCGcuGGGGCCGgGCAGCgCGg- -3'
miRNA:   3'- -UGCGCgGC--UCUCGGCgUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 31136 0.68 0.444928
Target:  5'- gGCGC-CCGAcGAGCUGC-CGGCCgCGg- -3'
miRNA:   3'- -UGCGcGGCU-CUCGGCGuGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 31195 0.72 0.264376
Target:  5'- cGCGCGCCGAGGcGCCGC-C-GCUgGUGc -3'
miRNA:   3'- -UGCGCGGCUCU-CGGCGuGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 31312 0.69 0.410301
Target:  5'- gGCGCGCCGcGGGCgGC--GGCCUGg- -3'
miRNA:   3'- -UGCGCGGCuCUCGgCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 31434 0.68 0.427407
Target:  5'- gGCG-GCCGGcGGCCGCGgCGGCCCc-- -3'
miRNA:   3'- -UGCgCGGCUcUCGGCGU-GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 31653 0.68 0.418801
Target:  5'- gGCGgGCCcGGAGcCCGCGCGcCCCGa- -3'
miRNA:   3'- -UGCgCGGcUCUC-GGCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 31854 0.67 0.484833
Target:  5'- cGCGCGCCcGGGcucgccggcguugcuGCCgGCGgAGCCCGUc -3'
miRNA:   3'- -UGCGCGGcUCU---------------CGG-CGUgUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 31967 0.68 0.462845
Target:  5'- gGCGCGCgGGGcgGGCCccgggGCGCgaAGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC--UCGG-----CGUG--UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 32013 0.68 0.444928
Target:  5'- cGCGCGCCGGcGGcCCGCGCucgcgcggggaAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCUcUC-GGCGUG-----------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 32090 0.66 0.537934
Target:  5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 32135 0.68 0.462845
Target:  5'- -gGCGCUGGGcGCCGC-CGcGCCCGc- -3'
miRNA:   3'- ugCGCGGCUCuCGGCGuGU-CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 32279 0.66 0.577054
Target:  5'- uCGCGCCGuccGcGUgGCGCGGCCCc-- -3'
miRNA:   3'- uGCGCGGCu--CuCGgCGUGUCGGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.