miRNA display CGI


Results 61 - 80 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 121866 0.66 0.564256
Target:  5'- cGCGCGCacaGGGccggcaccgcagucAGCaucaCGCGCAGCUCGUGc -3'
miRNA:   3'- -UGCGCGg--CUC--------------UCG----GCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 121650 0.66 0.577054
Target:  5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 121448 0.66 0.567203
Target:  5'- cCGcCGCCGGGuuguuaaaugGGUcuCGCGCGGCUCGUGg -3'
miRNA:   3'- uGC-GCGGCUC----------UCG--GCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 121415 0.68 0.453839
Target:  5'- cUGCGUgGAgggcgGAGCCGUugaGCGGCCCGa- -3'
miRNA:   3'- uGCGCGgCU-----CUCGGCG---UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 120688 0.69 0.401909
Target:  5'- aGCGCacGCCGAGcagcgcGGCCGCGC-GCUCGg- -3'
miRNA:   3'- -UGCG--CGGCUC------UCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 120551 0.79 0.085956
Target:  5'- cGCGCGCCagacggcguccuuaGAGAGCCGCGC-GCCCGc- -3'
miRNA:   3'- -UGCGCGG--------------CUCUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 120329 0.75 0.159468
Target:  5'- cGCGCGCaGGGcGCCGCGCAGCuCCGc- -3'
miRNA:   3'- -UGCGCGgCUCuCGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 120148 0.69 0.36085
Target:  5'- cCGCgGCCGAGGGgCGCuugccaagcuugcGCAGCaCCGUGc -3'
miRNA:   3'- uGCG-CGGCUCUCgGCG-------------UGUCG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 119734 0.67 0.471945
Target:  5'- -gGCGCCGAgggcGAGCCGaaaccCGGCCCa-- -3'
miRNA:   3'- ugCGCGGCU----CUCGGCgu---GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 119683 0.68 0.453839
Target:  5'- uGCGCGCCGuGcGCCGCcacgcuuuucaGCAGCgCCa-- -3'
miRNA:   3'- -UGCGCGGCuCuCGGCG-----------UGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 118933 0.66 0.56622
Target:  5'- cCGuCGCCcuucgcaGAcGGCCGCgaGCAGCCCGUc -3'
miRNA:   3'- uGC-GCGG-------CUcUCGGCG--UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 117830 0.68 0.418801
Target:  5'- uACGCgGCCGuGuGCCGCGCcGCCgaGUAc -3'
miRNA:   3'- -UGCG-CGGCuCuCGGCGUGuCGGg-CAU- -5'
6675 5' -62.6 NC_001847.1 + 116928 0.78 0.103765
Target:  5'- cACGacCGCCGAGAGaCCGC-CAGCCCGa- -3'
miRNA:   3'- -UGC--GCGGCUCUC-GGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 116923 1.05 0.001032
Target:  5'- cACGCGCCGAGAGCCGCACAGCCCGUAc -3'
miRNA:   3'- -UGCGCGGCUCUCGGCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 116539 0.68 0.427407
Target:  5'- cGCGCGCCGAc-GCCGCggACGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCUcuCGGCG--UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 116353 0.71 0.296456
Target:  5'- cGCGCGCCGcc-GCCGCGgAGCUCGc- -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 116137 0.7 0.324239
Target:  5'- -gGCGCUG-GGG-CGCGCGGCCCGa- -3'
miRNA:   3'- ugCGCGGCuCUCgGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 116132 0.68 0.436117
Target:  5'- cACGCGCgaaGAG-GCCgaggGCGCcGCCCGUGc -3'
miRNA:   3'- -UGCGCGg--CUCuCGG----CGUGuCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 115690 0.76 0.130501
Target:  5'- uGCGCGggggCGAGAGCCgGCuGCGGCCCGUGu -3'
miRNA:   3'- -UGCGCg---GCUCUCGG-CG-UGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 115685 0.69 0.410301
Target:  5'- aGCGCGCgGcGGAGCgGC-UGGCCCGg- -3'
miRNA:   3'- -UGCGCGgC-UCUCGgCGuGUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.