miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 115517 0.71 0.303224
Target:  5'- cGCGCGCCGAc-GCCgGCGCcccgGGCCCGa- -3'
miRNA:   3'- -UGCGCGGCUcuCGG-CGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 115203 0.69 0.385456
Target:  5'- -aGgGCCGAGcccUCGCGCGGCCCGa- -3'
miRNA:   3'- ugCgCGGCUCuc-GGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 115070 0.68 0.444928
Target:  5'- cCGCGCCGcgGGAGCCGC-CAcGCCg--- -3'
miRNA:   3'- uGCGCGGC--UCUCGGCGuGU-CGGgcau -5'
6675 5' -62.6 NC_001847.1 + 115026 0.7 0.346318
Target:  5'- cGCGCGCCauGAGGGCgGCG-AGUCCGg- -3'
miRNA:   3'- -UGCGCGG--CUCUCGgCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 114991 0.66 0.547638
Target:  5'- -aGCGCCGAGu-CCGCAuCGGgCCGa- -3'
miRNA:   3'- ugCGCGGCUCucGGCGU-GUCgGGCau -5'
6675 5' -62.6 NC_001847.1 + 113763 0.79 0.091228
Target:  5'- uCGuCGCUGAGAGCCGCccgagGCGGCCCGa- -3'
miRNA:   3'- uGC-GCGGCUCUCGGCG-----UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 113622 0.66 0.547638
Target:  5'- gGCGCGuuGGc--CCGCGCGGCCCc-- -3'
miRNA:   3'- -UGCGCggCUcucGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 113406 0.69 0.410301
Target:  5'- cCGCGCgCGcGGGCCgGCGcCGGCCCGc- -3'
miRNA:   3'- uGCGCG-GCuCUCGG-CGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 113007 0.66 0.537934
Target:  5'- uGCGCGCCGcc-GCCGCcGCcgGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucuCGGCG-UG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 112945 0.69 0.410301
Target:  5'- cGCGUGCUGGGAGgCGCugcuGCAGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCUCgGCG----UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 112880 0.67 0.471945
Target:  5'- cGCGCGCUGc--GCCGCGC-GCUCGUc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUGuCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 111280 0.69 0.369454
Target:  5'- gGCGCcggGCCGGGGGCgGCGCucGGCCgGg- -3'
miRNA:   3'- -UGCG---CGGCUCUCGgCGUG--UCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 110755 0.65 0.583972
Target:  5'- cGCGCGCCGcgccGGAGuUCGCGCaugcggguuuuuagGGCCCu-- -3'
miRNA:   3'- -UGCGCGGC----UCUC-GGCGUG--------------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 110686 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 110389 0.74 0.184878
Target:  5'- cGCGCGUCGcaccucAGccGGCUGCACGGCCCGg- -3'
miRNA:   3'- -UGCGCGGC------UC--UCGGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 110192 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 109602 0.67 0.509201
Target:  5'- uCGUGuCCGAG-GUCGCGgAGCCgGUGc -3'
miRNA:   3'- uGCGC-GGCUCuCGGCGUgUCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 108771 0.69 0.393626
Target:  5'- -gGCGCCG-GAcgcGCCGgGCGGCCCa-- -3'
miRNA:   3'- ugCGCGGCuCU---CGGCgUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 108686 0.71 0.296456
Target:  5'- cCGCGCUGGcgaacAGCCGCGCGGCCUa-- -3'
miRNA:   3'- uGCGCGGCUc----UCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 108494 0.68 0.462845
Target:  5'- gUGgGCCGgccGGGGCCGCcCAGaCCCGg- -3'
miRNA:   3'- uGCgCGGC---UCUCGGCGuGUC-GGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.