miRNA display CGI


Results 101 - 120 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 106795 0.68 0.444928
Target:  5'- aGCGgGCgGAugacGGCCGCGCuGCCCGc- -3'
miRNA:   3'- -UGCgCGgCUc---UCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 106792 0.77 0.120948
Target:  5'- -gGCGCCGGGGGCCcgggcGCGCGGCCCc-- -3'
miRNA:   3'- ugCGCGGCUCUCGG-----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 106090 0.72 0.246514
Target:  5'- cGCGCgGCCGGcGAGCacggCGCGCAGCUCGg- -3'
miRNA:   3'- -UGCG-CGGCU-CUCG----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 106017 0.69 0.377398
Target:  5'- -aGUGCgCGAGguAGuCCGCACugGGCCCGUAc -3'
miRNA:   3'- ugCGCG-GCUC--UC-GGCGUG--UCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 105936 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 105873 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 105843 0.75 0.167568
Target:  5'- cCGCGCCGAGcAGCUcgGCGGCCCGg- -3'
miRNA:   3'- uGCGCGGCUC-UCGGcgUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105805 0.73 0.208721
Target:  5'- cGCGCGCUG-GAGCCGCGCGcGCuCCa-- -3'
miRNA:   3'- -UGCGCGGCuCUCGGCGUGU-CG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 105690 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 104782 0.72 0.258308
Target:  5'- -aGCGCCGAGGGCCcgccagcaacgcGCGguGCUCGUc -3'
miRNA:   3'- ugCGCGGCUCUCGG------------CGUguCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 104722 0.7 0.353914
Target:  5'- aGCGCGUgCGAGAGcCCGCcGCGGCgCGg- -3'
miRNA:   3'- -UGCGCG-GCUCUC-GGCG-UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 104652 0.72 0.270559
Target:  5'- cGCGCGcCCGAGGGCCGCGCcgaucgcGUCCc-- -3'
miRNA:   3'- -UGCGC-GGCUCUCGGCGUGu------CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 104626 0.69 0.361626
Target:  5'- uGCGCGCCGAGcgcGCUcacguccgGCGC-GCCCGUc -3'
miRNA:   3'- -UGCGCGGCUCu--CGG--------CGUGuCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 104601 0.72 0.264376
Target:  5'- cCGCGUCGAGAGCagcaGCAC-GCCCu-- -3'
miRNA:   3'- uGCGCGGCUCUCGg---CGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 104591 0.69 0.393626
Target:  5'- -aGaCGCCGcGGAGCCGCGCgacgAGCUCGg- -3'
miRNA:   3'- ugC-GCGGC-UCUCGGCGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 104404 0.67 0.471945
Target:  5'- aGCGCGCCGcucGGGCCagcGCGCGGCgCa-- -3'
miRNA:   3'- -UGCGCGGCu--CUCGG---CGUGUCGgGcau -5'
6675 5' -62.6 NC_001847.1 + 104373 0.71 0.289806
Target:  5'- gACGCGCCGcGAgGCCaGCACGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCuCU-CGG-CGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 104194 0.7 0.346318
Target:  5'- -aGCGCCGGcAGCaCGCGCuGCCgGUAc -3'
miRNA:   3'- ugCGCGGCUcUCG-GCGUGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 104077 0.68 0.462845
Target:  5'- gGCGCGCCGAGcccccagcgguuGGCgGCGCGGUggCUGg- -3'
miRNA:   3'- -UGCGCGGCUC------------UCGgCGUGUCG--GGCau -5'
6675 5' -62.6 NC_001847.1 + 103742 0.66 0.577054
Target:  5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.