Results 61 - 80 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 59507 | 0.74 | 0.176034 |
Target: 5'- gUGCGCCGAG-GCCGCAcCGGCuuGg- -3' miRNA: 3'- uGCGCGGCUCuCGGCGU-GUCGggCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132189 | 0.74 | 0.176034 |
Target: 5'- uGCGCGCCGAGgcGGCCGCcgcgcuggagGCGGCCgCGc- -3' miRNA: 3'- -UGCGCGGCUC--UCGGCG----------UGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 74388 | 0.73 | 0.213797 |
Target: 5'- -gGCGCUGGGGGaCCGCGCGGCCg--- -3' miRNA: 3'- ugCGCGGCUCUC-GGCGUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 81422 | 0.73 | 0.224267 |
Target: 5'- cGCGCGCCGAuccgccccgcGAGCCGCcgGCGGCgCGc- -3' miRNA: 3'- -UGCGCGGCU----------CUCGGCG--UGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131337 | 0.73 | 0.224267 |
Target: 5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3' miRNA: 3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 4170 | 0.73 | 0.229664 |
Target: 5'- aGCGgGCCuuguuuuGGGCCGCGC-GCCCGUGg -3' miRNA: 3'- -UGCgCGGcu-----CUCGGCGUGuCGGGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59861 | 0.73 | 0.229664 |
Target: 5'- gGCGCggucGCCGAGGGCCggcGCGCGGCCUc-- -3' miRNA: 3'- -UGCG----CGGCUCUCGG---CGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 103703 | 0.73 | 0.229664 |
Target: 5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3' miRNA: 3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 36435 | 0.73 | 0.23517 |
Target: 5'- cGCGCGCCGuAGcGGCgCGCGCGGCgCGg- -3' miRNA: 3'- -UGCGCGGC-UC-UCG-GCGUGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59324 | 0.72 | 0.240786 |
Target: 5'- -gGCGCCGGcGGcGCCGUAcCAGCCCGg- -3' miRNA: 3'- ugCGCGGCU-CU-CGGCGU-GUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 105805 | 0.73 | 0.208721 |
Target: 5'- cGCGCGCUG-GAGCCGCGCGcGCuCCa-- -3' miRNA: 3'- -UGCGCGGCuCUCGGCGUGU-CG-GGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3868 | 0.73 | 0.208721 |
Target: 5'- -gGCGCCG-GGGCUGCGCAGCUCc-- -3' miRNA: 3'- ugCGCGGCuCUCGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3377 | 0.74 | 0.176034 |
Target: 5'- cGCGCGCCGA--GCCGCGCaaAGCCCu-- -3' miRNA: 3'- -UGCGCGGCUcuCGGCGUG--UCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 36348 | 0.74 | 0.179086 |
Target: 5'- cGCGCGCCGcggcgcgcgcacgcGGcGCCGcCGCGGCCCGg- -3' miRNA: 3'- -UGCGCGGC--------------UCuCGGC-GUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 41367 | 0.74 | 0.180408 |
Target: 5'- uGCGCGCCGAGAG-CGCACGucacGCUCGc- -3' miRNA: 3'- -UGCGCGGCUCUCgGCGUGU----CGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 87284 | 0.74 | 0.180408 |
Target: 5'- uGCGCGCCGAcGGCC-CGCGGCCgCGg- -3' miRNA: 3'- -UGCGCGGCUcUCGGcGUGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 133628 | 0.74 | 0.184878 |
Target: 5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3' miRNA: 3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131151 | 0.74 | 0.189446 |
Target: 5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3' miRNA: 3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 29027 | 0.74 | 0.194113 |
Target: 5'- uCGCGCCcAGAGCCGCGC-GCgCCGg- -3' miRNA: 3'- uGCGCGGcUCUCGGCGUGuCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 96916 | 0.74 | 0.19888 |
Target: 5'- gGCG-GCCGcguAGAGgCGCGCGGCCCGg- -3' miRNA: 3'- -UGCgCGGC---UCUCgGCGUGUCGGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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