miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 106090 0.72 0.246514
Target:  5'- cGCGCgGCCGGcGAGCacggCGCGCAGCUCGg- -3'
miRNA:   3'- -UGCG-CGGCU-CUCG----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 76402 0.72 0.252355
Target:  5'- -gGCGCCGGGGGCCGCgGCGGgggcacCCCGc- -3'
miRNA:   3'- ugCGCGGCUCUCGGCG-UGUC------GGGCau -5'
6675 5' -62.6 NC_001847.1 + 21357 0.72 0.252355
Target:  5'- uGCGCGCCGucggcggcucGGGCCGCcucggGCGGCUCGUc -3'
miRNA:   3'- -UGCGCGGCu---------CUCGGCG-----UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 124567 0.72 0.252355
Target:  5'- cGCGCGCgGGgGGGCCGC-CGGCgCCGg- -3'
miRNA:   3'- -UGCGCGgCU-CUCGGCGuGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 56496 0.72 0.254722
Target:  5'- cUGCGagaCGAGAGCCGCgggaacuuccgcuucACGGCCCGc- -3'
miRNA:   3'- uGCGCg--GCUCUCGGCG---------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 56840 0.72 0.262544
Target:  5'- cGCGCGCCGc--GCCGCGCcgucugcgcccggcGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUG--------------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 73109 0.72 0.264376
Target:  5'- uGCGCacagucaacGCCGGGAGCCGCAUacggccgcagGGCCCc-- -3'
miRNA:   3'- -UGCG---------CGGCUCUCGGCGUG----------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 59324 0.72 0.240786
Target:  5'- -gGCGCCGGcGGcGCCGUAcCAGCCCGg- -3'
miRNA:   3'- ugCGCGGCU-CU-CGGCGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 36435 0.73 0.23517
Target:  5'- cGCGCGCCGuAGcGGCgCGCGCGGCgCGg- -3'
miRNA:   3'- -UGCGCGGC-UC-UCG-GCGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 103703 0.73 0.229664
Target:  5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3'
miRNA:   3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 29027 0.74 0.194113
Target:  5'- uCGCGCCcAGAGCCGCGC-GCgCCGg- -3'
miRNA:   3'- uGCGCGGcUCUCGGCGUGuCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 96916 0.74 0.19888
Target:  5'- gGCG-GCCGcguAGAGgCGCGCGGCCCGg- -3'
miRNA:   3'- -UGCgCGGC---UCUCgGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3868 0.73 0.208721
Target:  5'- -gGCGCCG-GGGCUGCGCAGCUCc-- -3'
miRNA:   3'- ugCGCGGCuCUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 105805 0.73 0.208721
Target:  5'- cGCGCGCUG-GAGCCGCGCGcGCuCCa-- -3'
miRNA:   3'- -UGCGCGGCuCUCGGCGUGU-CG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 74388 0.73 0.213797
Target:  5'- -gGCGCUGGGGGaCCGCGCGGCCg--- -3'
miRNA:   3'- ugCGCGGCUCUC-GGCGUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 81422 0.73 0.224267
Target:  5'- cGCGCGCCGAuccgccccgcGAGCCGCcgGCGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCU----------CUCGGCG--UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 131337 0.73 0.224267
Target:  5'- aGCGCGCCGcc-GCCGCcCGGCCgCGUGc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGuGUCGG-GCAU- -5'
6675 5' -62.6 NC_001847.1 + 4170 0.73 0.229664
Target:  5'- aGCGgGCCuuguuuuGGGCCGCGC-GCCCGUGg -3'
miRNA:   3'- -UGCgCGGcu-----CUCGGCGUGuCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 59861 0.73 0.229664
Target:  5'- gGCGCggucGCCGAGGGCCggcGCGCGGCCUc-- -3'
miRNA:   3'- -UGCG----CGGCUCUCGG---CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 104601 0.72 0.264376
Target:  5'- cCGCGUCGAGAGCagcaGCAC-GCCCu-- -3'
miRNA:   3'- uGCGCGGCUCUCGg---CGUGuCGGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.