miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 113622 0.66 0.547638
Target:  5'- gGCGCGuuGGc--CCGCGCGGCCCc-- -3'
miRNA:   3'- -UGCGCggCUcucGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 41835 0.66 0.567203
Target:  5'- gGCGCGCCuacacacGCgCGCGCGGCCUGc- -3'
miRNA:   3'- -UGCGCGGcucu---CG-GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 73251 0.66 0.577054
Target:  5'- gGCGCGCuCGAG-GCCGUGCGcGCacgCCGa- -3'
miRNA:   3'- -UGCGCG-GCUCuCGGCGUGU-CG---GGCau -5'
6675 5' -62.6 NC_001847.1 + 132546 0.66 0.547638
Target:  5'- gGCGCGgCGGGcucgcgugcGGCCGCGgCGGCCgCGc- -3'
miRNA:   3'- -UGCGCgGCUC---------UCGGCGU-GUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 121650 0.66 0.577054
Target:  5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29258 0.66 0.537934
Target:  5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3'
miRNA:   3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 58082 0.66 0.577054
Target:  5'- cGCGCGCCGcagcgGGuGCCGCGCcGCUa--- -3'
miRNA:   3'- -UGCGCGGC-----UCuCGGCGUGuCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 35461 0.66 0.537934
Target:  5'- cCGCGCCGcGcGCCGCAaagcCAGCCUu-- -3'
miRNA:   3'- uGCGCGGCuCuCGGCGU----GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 123350 0.66 0.537934
Target:  5'- cACGCGCCGGGucgaaAGCgC-CACuGCCCGc- -3'
miRNA:   3'- -UGCGCGGCUC-----UCG-GcGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 53295 0.66 0.537934
Target:  5'- cGCGCGCuCGAucGCCGC-CAGUgCGg- -3'
miRNA:   3'- -UGCGCG-GCUcuCGGCGuGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 27341 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 102293 0.66 0.546665
Target:  5'- uCGCGCgCGAGcGCCGCggucucgGCGGCCaCGc- -3'
miRNA:   3'- uGCGCG-GCUCuCGGCG-------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 32810 0.66 0.547638
Target:  5'- gGCGCGuuG-GAGCCGgaCGCGGCCg--- -3'
miRNA:   3'- -UGCGCggCuCUCGGC--GUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 57288 0.66 0.557396
Target:  5'- cCGgGCCGAGAGCgcccccagCGCGCuGGCCaGUGc -3'
miRNA:   3'- uGCgCGGCUCUCG--------GCGUG-UCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 42891 0.66 0.557396
Target:  5'- cCGCGCCaaGAgcgcGAGCUGCAgCGGCUCGa- -3'
miRNA:   3'- uGCGCGG--CU----CUCGGCGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3123 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 29330 0.66 0.567203
Target:  5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3'
miRNA:   3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 13395 0.66 0.570154
Target:  5'- gGCGCGCCGcGGGCCcugggagaaagacggGCGCGccagcgcGCgCCGUGa -3'
miRNA:   3'- -UGCGCGGCuCUCGG---------------CGUGU-------CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 101034 0.66 0.576067
Target:  5'- -gGCGCCGcAGGcuccgccGCCGCGCgAGCCaCGg- -3'
miRNA:   3'- ugCGCGGC-UCU-------CGGCGUG-UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 91890 0.66 0.577054
Target:  5'- gUGCcccCCGGGcGCCGCGCcGCCCGc- -3'
miRNA:   3'- uGCGc--GGCUCuCGGCGUGuCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.