miRNA display CGI


Results 61 - 80 of 554 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 32810 0.66 0.547638
Target:  5'- gGCGCGuuG-GAGCCGgaCGCGGCCg--- -3'
miRNA:   3'- -UGCGCggCuCUCGGC--GUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 80773 0.66 0.537934
Target:  5'- cGCcCGCCGcAGcAGCuCGCGCAGCgCGUc -3'
miRNA:   3'- -UGcGCGGC-UC-UCG-GCGUGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 30138 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 7873 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 387 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 86094 0.66 0.567203
Target:  5'- cCGCgGCCGuGAGCUGCGCgccaccacGGCUCGc- -3'
miRNA:   3'- uGCG-CGGCuCUCGGCGUG--------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 14447 0.66 0.567203
Target:  5'- -gGCGCCGGGG--UGCGCGGCCgCGg- -3'
miRNA:   3'- ugCGCGGCUCUcgGCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 62537 0.66 0.56622
Target:  5'- cACGUGCCGuGcGGCCaGCAgcgcguuuuggccCAGCCCGc- -3'
miRNA:   3'- -UGCGCGGCuC-UCGG-CGU-------------GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 93310 0.66 0.557396
Target:  5'- gACGUGCCccagcccuGGGAcCCGCGCcGCCCGc- -3'
miRNA:   3'- -UGCGCGG--------CUCUcGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 44961 0.66 0.557396
Target:  5'- gGCGCGCCGcAGcagccccgcaaGGCUGCGCuuggccaugcGCCCGa- -3'
miRNA:   3'- -UGCGCGGC-UC-----------UCGGCGUGu---------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 19433 0.67 0.509201
Target:  5'- -aGCGCCaaaGGCCGCGC-GCCCGc- -3'
miRNA:   3'- ugCGCGGcucUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 70945 0.67 0.509201
Target:  5'- gACGCGCC-AGGGUCGCcaGCGucgcGCCCGc- -3'
miRNA:   3'- -UGCGCGGcUCUCGGCG--UGU----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 124970 0.66 0.537934
Target:  5'- aGCGCGCUGcuuaAGCCGCGCgcgucgaaaaAGCCCu-- -3'
miRNA:   3'- -UGCGCGGCuc--UCGGCGUG----------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 29149 0.66 0.537934
Target:  5'- cUGCGCCGucgccuGCCGCgaggcgcuggagGCGGCCCGc- -3'
miRNA:   3'- uGCGCGGCucu---CGGCG------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 35461 0.66 0.537934
Target:  5'- cCGCGCCGcGcGCCGCAaagcCAGCCUu-- -3'
miRNA:   3'- uGCGCGGCuCuCGGCGU----GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 29258 0.66 0.537934
Target:  5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3'
miRNA:   3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 82530 0.66 0.52829
Target:  5'- cACGCGCCGA-AGUCaaagGCGCcGCCCGc- -3'
miRNA:   3'- -UGCGCGGCUcUCGG----CGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 38598 0.66 0.52829
Target:  5'- cCGCGCgCGc-GGCUGCACAGCCgGc- -3'
miRNA:   3'- uGCGCG-GCucUCGGCGUGUCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 91516 0.66 0.527329
Target:  5'- cCGCGCCcuguaaugugcuuGAGGGCCGUggcCAGCaCCGg- -3'
miRNA:   3'- uGCGCGG-------------CUCUCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 61963 0.67 0.517757
Target:  5'- cGCGCGCCGuGcccGCCgGCGCggcgggcauaaugGGCCCGa- -3'
miRNA:   3'- -UGCGCGGCuCu--CGG-CGUG-------------UCGGGCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.