miRNA display CGI


Results 81 - 100 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 39381 0.66 0.537934
Target:  5'- cGCGaCGCCGucggGGAGCCGgCGcCGGCCgGg- -3'
miRNA:   3'- -UGC-GCGGC----UCUCGGC-GU-GUCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 82734 0.66 0.537934
Target:  5'- cGCGgGCCcAGcGCCuggaGCACGGCgCCGUAg -3'
miRNA:   3'- -UGCgCGGcUCuCGG----CGUGUCG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 32090 0.66 0.537934
Target:  5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 122397 0.66 0.536967
Target:  5'- uGCGCGaaGAaggcgcuGGGCCGCACccGGCCCu-- -3'
miRNA:   3'- -UGCGCggCU-------CUCGGCGUG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 77084 0.66 0.52829
Target:  5'- uCGcCGCCGAagcgcGAGCUGCGuCAGCCgGg- -3'
miRNA:   3'- uGC-GCGGCU-----CUCGGCGU-GUCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 91516 0.66 0.527329
Target:  5'- cCGCGCCcuguaaugugcuuGAGGGCCGUggcCAGCaCCGg- -3'
miRNA:   3'- uGCGCGG-------------CUCUCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 61963 0.67 0.517757
Target:  5'- cGCGCGCCGuGcccGCCgGCGCggcgggcauaaugGGCCCGa- -3'
miRNA:   3'- -UGCGCGGCuCu--CGG-CGUG-------------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 44961 0.66 0.557396
Target:  5'- gGCGCGCCGcAGcagccccgcaaGGCUGCGCuuggccaugcGCCCGa- -3'
miRNA:   3'- -UGCGCGGC-UC-----------UCGGCGUGu---------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 93310 0.66 0.557396
Target:  5'- gACGUGCCccagcccuGGGAcCCGCGCcGCCCGc- -3'
miRNA:   3'- -UGCGCGG--------CUCUcGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 62537 0.66 0.56622
Target:  5'- cACGUGCCGuGcGGCCaGCAgcgcguuuuggccCAGCCCGc- -3'
miRNA:   3'- -UGCGCGGCuC-UCGG-CGU-------------GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 52252 0.67 0.499766
Target:  5'- cGCGCGCCGcGGcuuGGCUGCGgCGcGCCCGc- -3'
miRNA:   3'- -UGCGCGGC-UC---UCGGCGU-GU-CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 101509 0.67 0.490408
Target:  5'- cGCGCGCCucgcGGucAGCCGC-CGcGCCCGUc -3'
miRNA:   3'- -UGCGCGGc---UC--UCGGCGuGU-CGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 74121 0.67 0.490408
Target:  5'- cCGCGCCcGGGGaugugaCGCGCGGCgCCGa- -3'
miRNA:   3'- uGCGCGGcUCUCg-----GCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 49024 0.67 0.490408
Target:  5'- cCGCGUCGcGGAGCCGCucguGCAGCgugcgCGUAa -3'
miRNA:   3'- uGCGCGGC-UCUCGGCG----UGUCGg----GCAU- -5'
6675 5' -62.6 NC_001847.1 + 102146 0.67 0.481133
Target:  5'- cGCGCGaCCac-GGCgGCGCGGCCCGc- -3'
miRNA:   3'- -UGCGC-GGcucUCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30138 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 7873 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 387 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 86094 0.66 0.567203
Target:  5'- cCGCgGCCGuGAGCUGCGCgccaccacGGCUCGc- -3'
miRNA:   3'- uGCG-CGGCuCUCGGCGUG--------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 14447 0.66 0.567203
Target:  5'- -gGCGCCGGGG--UGCGCGGCCgCGg- -3'
miRNA:   3'- ugCGCGGCUCUcgGCGUGUCGG-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.