miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 128658 0.68 0.889641
Target:  5'- cCGCUaccUACGAccugcaGGCCgUGCGGGACuGCc -3'
miRNA:   3'- -GCGAga-AUGCU------CCGGgACGCUUUG-CG- -5'
6677 3' -53.9 NC_001847.1 + 128446 0.67 0.921081
Target:  5'- gCGCUC------GGCCCUGCGc-GCGCg -3'
miRNA:   3'- -GCGAGaaugcuCCGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 128147 0.66 0.951114
Target:  5'- cCGCUCgucGCGuuuuaucugcugggcGGCCCgccggGCgGAAGCGCc -3'
miRNA:   3'- -GCGAGaa-UGCu--------------CCGGGa----CG-CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 126527 0.75 0.518209
Target:  5'- cCGCUCccccgGCGGGGCUugcgCUGCGGcuGACGCu -3'
miRNA:   3'- -GCGAGaa---UGCUCCGG----GACGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 126218 0.7 0.818784
Target:  5'- aGCUCacuugGCGGGGUCgucgGCGggGCGUc -3'
miRNA:   3'- gCGAGaa---UGCUCCGGga--CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 125228 0.67 0.926634
Target:  5'- uGCUCguccgcggggGCGGGGCCCga-GAccACGCg -3'
miRNA:   3'- gCGAGaa--------UGCUCCGGGacgCUu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 125193 0.66 0.954779
Target:  5'- uGCUCUUugGgGGGUCCgaGUcccAGACGCu -3'
miRNA:   3'- gCGAGAAugC-UCCGGGa-CGc--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 125008 0.67 0.915281
Target:  5'- cCGCUCgcgcUACGgccGGGCCCgcucgccGCGAAG-GCg -3'
miRNA:   3'- -GCGAGa---AUGC---UCCGGGa------CGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 124894 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 122850 0.7 0.800909
Target:  5'- aGUagUCUUGCGGGGCaCCcccuucCGggGCGCg -3'
miRNA:   3'- gCG--AGAAUGCUCCG-GGac----GCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 122782 0.69 0.827462
Target:  5'- gCGCUCcaGC-AGGCUCcgGUGggGCGCu -3'
miRNA:   3'- -GCGAGaaUGcUCCGGGa-CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121862 0.66 0.954779
Target:  5'- uGCUUcaccgACGuGGCCCUG---GACGCg -3'
miRNA:   3'- gCGAGaa---UGCuCCGGGACgcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121099 0.67 0.931938
Target:  5'- gCGCUCUgcgccGCGAcGGUaaaCUGCGcgcuGCGCc -3'
miRNA:   3'- -GCGAGAa----UGCU-CCGg--GACGCuu--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 120829 0.71 0.733854
Target:  5'- cCGCUCg-AUGAGGCCC--CGAGAgGCg -3'
miRNA:   3'- -GCGAGaaUGCUCCGGGacGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 120399 0.7 0.800909
Target:  5'- gGCgagcGCGAGGCCCgGCGcgcguauguGGGCGCa -3'
miRNA:   3'- gCGagaaUGCUCCGGGaCGC---------UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 119611 0.66 0.954779
Target:  5'- gGCgacgACGAGGCCC-GCGAGgAUGa -3'
miRNA:   3'- gCGagaaUGCUCCGGGaCGCUU-UGCg -5'
6677 3' -53.9 NC_001847.1 + 118199 1.13 0.002257
Target:  5'- cCGCUCUUACGAGGCCCUGCGAAACGCa -3'
miRNA:   3'- -GCGAGAAUGCUCCGGGACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 118127 0.81 0.255473
Target:  5'- gGCg---GCGAGGCCguCUGCGAGGCGCg -3'
miRNA:   3'- gCGagaaUGCUCCGG--GACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 117518 0.66 0.937487
Target:  5'- cCGCUCcacgcgcggcgacgACGAGGCCgUGCGcAACc- -3'
miRNA:   3'- -GCGAGaa------------UGCUCCGGgACGCuUUGcg -5'
6677 3' -53.9 NC_001847.1 + 117394 0.67 0.930373
Target:  5'- uGCUCUgcgagcGCGAGGCCgUGgccgccucguacgcCGAGcCGCu -3'
miRNA:   3'- gCGAGAa-----UGCUCCGGgAC--------------GCUUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.