miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 21850 0.67 0.933991
Target:  5'- gCGCUCggugcagcagguggUGCGGGGgC-UGCGgcGCGCu -3'
miRNA:   3'- -GCGAGa-------------AUGCUCCgGgACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 22081 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 22193 0.7 0.79173
Target:  5'- uGCgCggGCGcuGGGCCgUGCuGAAGCGCg -3'
miRNA:   3'- gCGaGaaUGC--UCCGGgACG-CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 22361 0.67 0.926634
Target:  5'- uGCUggcagacuaCUgggACGAGGCCCccGCGggGC-Cg -3'
miRNA:   3'- gCGA---------GAa--UGCUCCGGGa-CGCuuUGcG- -5'
6677 3' -53.9 NC_001847.1 + 22415 0.67 0.926634
Target:  5'- uGCUCguccgcggggGCGGGGCCCga-GAccACGCg -3'
miRNA:   3'- gCGAGaa--------UGCUCCGGGacgCUu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 23405 0.7 0.818784
Target:  5'- aGCUCacuugGCGGGGUCgucgGCGggGCGUc -3'
miRNA:   3'- gCGAGaa---UGCUCCGGga--CGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 23546 0.68 0.896412
Target:  5'- aCGC-CguugUugGuGGCCUUGCGGAucuUGCa -3'
miRNA:   3'- -GCGaGa---AugCuCCGGGACGCUUu--GCG- -5'
6677 3' -53.9 NC_001847.1 + 26192 0.67 0.915281
Target:  5'- uCGCUCaccgcCGGGGUCCUggGCGGGAaGCg -3'
miRNA:   3'- -GCGAGaau--GCUCCGGGA--CGCUUUgCG- -5'
6677 3' -53.9 NC_001847.1 + 27652 0.73 0.62067
Target:  5'- gGCUCggAgGAagacccGGCCCUGCucGACGCg -3'
miRNA:   3'- gCGAGaaUgCU------CCGGGACGcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 27750 0.69 0.835956
Target:  5'- gGCggUUGCGgcgggGGGCUgUGCGggGCGUa -3'
miRNA:   3'- gCGagAAUGC-----UCCGGgACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 27847 0.69 0.850755
Target:  5'- aGCggagaccccgUGCG-GGCCCUGUGGGccGCGCu -3'
miRNA:   3'- gCGaga-------AUGCuCCGGGACGCUU--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 28022 0.7 0.800909
Target:  5'- cCGCgCUUACGAGcGCCUgcacacGCcAGACGCg -3'
miRNA:   3'- -GCGaGAAUGCUC-CGGGa-----CGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 29115 0.69 0.843436
Target:  5'- aCGCg--UACG-GGCCCagUGCGGAcuaccucGCGCa -3'
miRNA:   3'- -GCGagaAUGCuCCGGG--ACGCUU-------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 29157 0.66 0.941806
Target:  5'- uCGC-CUgccGCGAGGCgCUG-GAGGCGg -3'
miRNA:   3'- -GCGaGAa--UGCUCCGgGACgCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 29313 0.74 0.610261
Target:  5'- uGCUCg-GCGcGGCCCgcgacgcgGUGGAGCGCg -3'
miRNA:   3'- gCGAGaaUGCuCCGGGa-------CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 29349 0.69 0.852359
Target:  5'- gGCUCcagcGCGcGGCCCcgGCGGcgcuGCGCg -3'
miRNA:   3'- gCGAGaa--UGCuCCGGGa-CGCUu---UGCG- -5'
6677 3' -53.9 NC_001847.1 + 29543 0.67 0.921081
Target:  5'- gCGCUCgcgGCccugGAGGCCgCcgGCgGggGCGCc -3'
miRNA:   3'- -GCGAGaa-UG----CUCCGG-Ga-CG-CuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 29940 0.67 0.928785
Target:  5'- aGaCUCUgggcCGAGGCgCCgGCGAaaagccgccgccgccGACGCg -3'
miRNA:   3'- gC-GAGAau--GCUCCG-GGaCGCU---------------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 30172 0.68 0.889641
Target:  5'- cCGCUCUUcccCGA-GCCCUgGCGcccGGCGCu -3'
miRNA:   3'- -GCGAGAAu--GCUcCGGGA-CGCu--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 30243 0.75 0.548423
Target:  5'- cCGC-CgcGCG-GGCCCcGCGggGCGCu -3'
miRNA:   3'- -GCGaGaaUGCuCCGGGaCGCuuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.