miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 63843 0.66 0.683744
Target:  5'- cGUGCGcuUUCCUGCgCGCGgGGGGCg- -3'
miRNA:   3'- -CACGUu-GAGGGCGgGCGCgCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 77721 0.66 0.634173
Target:  5'- gGUGCGcGCUUggCGCgCGUGCGAGGCCc -3'
miRNA:   3'- -CACGU-UGAGg-GCGgGCGCGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 105354 0.66 0.644121
Target:  5'- -gGCGgcGCUCCCG-CCGC-CG-GGCCGg -3'
miRNA:   3'- caCGU--UGAGGGCgGGCGcGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 59125 0.66 0.643126
Target:  5'- -cGCcGCUCCgG-CCGCGCGGGuggucccaguuguACCGg -3'
miRNA:   3'- caCGuUGAGGgCgGGCGCGCUC-------------UGGC- -5'
6677 5' -61.1 NC_001847.1 + 29575 0.66 0.634173
Target:  5'- cGUGcCGGCUgCCGUCU-UGCGAGACCc -3'
miRNA:   3'- -CAC-GUUGAgGGCGGGcGCGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 87059 0.66 0.683744
Target:  5'- cUGCAGCUUCCGCgCgGCGUGc-GCCc -3'
miRNA:   3'- cACGUUGAGGGCG-GgCGCGCucUGGc -5'
6677 5' -61.1 NC_001847.1 + 88526 0.66 0.673879
Target:  5'- uGUGCuuCaCCaCGCUCGUgcgccGCGAGGCCGc -3'
miRNA:   3'- -CACGuuGaGG-GCGGGCG-----CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 6537 0.66 0.673879
Target:  5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3'
miRNA:   3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 114237 0.66 0.634173
Target:  5'- cGUGUAGCgCUCGCCCGCGaCGcGcucgcugcccaGCCGa -3'
miRNA:   3'- -CACGUUGaGGGCGGGCGC-GCuC-----------UGGC- -5'
6677 5' -61.1 NC_001847.1 + 10829 0.66 0.683744
Target:  5'- cUGCAGCaCCUGCgcgcgacggCgGCGCGuGGCCGa -3'
miRNA:   3'- cACGUUGaGGGCG---------GgCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 29899 0.66 0.683744
Target:  5'- -gGCGGC-CCUGCCggccgcCGCGgGGGGCCc -3'
miRNA:   3'- caCGUUGaGGGCGG------GCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 98461 0.66 0.683744
Target:  5'- -cGCcGCUCUCGUCCaGCGgGGGGCg- -3'
miRNA:   3'- caCGuUGAGGGCGGG-CGCgCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 64444 0.66 0.641137
Target:  5'- -cGCGggcGCcCCCGCCgccgcccgcggcggCGCGgGGGGCCGa -3'
miRNA:   3'- caCGU---UGaGGGCGG--------------GCGCgCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 99305 0.66 0.673879
Target:  5'- aUGCAcgcccaUCgCCGCCCGC-CGgGGGCCGa -3'
miRNA:   3'- cACGUug----AG-GGCGGGCGcGC-UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 122134 0.66 0.663981
Target:  5'- -cGCGACggCCgGCgcgcagggcgCCGCGCGGGACg- -3'
miRNA:   3'- caCGUUGa-GGgCG----------GGCGCGCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 125406 0.66 0.673879
Target:  5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3'
miRNA:   3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 134168 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 76919 0.66 0.673879
Target:  5'- -cGCcGCUgCCGCCCG-GCGGGcagauCCGc -3'
miRNA:   3'- caCGuUGAgGGCGGGCgCGCUCu----GGC- -5'
6677 5' -61.1 NC_001847.1 + 109350 0.66 0.673879
Target:  5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3'
miRNA:   3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 34795 0.66 0.673879
Target:  5'- -cGCGGCUacgacccgcggCCGCUgGCGCGgcAGGCCGa -3'
miRNA:   3'- caCGUUGAg----------GGCGGgCGCGC--UCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.