miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 66274 0.73 0.302196
Target:  5'- -gGCGACUCCCgGgCgGCGCGAGuaggcGCCGg -3'
miRNA:   3'- caCGUUGAGGG-CgGgCGCGCUC-----UGGC- -5'
6677 5' -61.1 NC_001847.1 + 73780 0.73 0.302196
Target:  5'- -cGCGACgCCuCGCCgGUGCGGGGCUGc -3'
miRNA:   3'- caCGUUGaGG-GCGGgCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 96468 0.73 0.302196
Target:  5'- cGUGCAACUCgCUgaGCuuGCGCGAGGgcuCCGu -3'
miRNA:   3'- -CACGUUGAG-GG--CGggCGCGCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 89338 0.72 0.309737
Target:  5'- -gGCAGCUCCCGCCgggcuuUGCGCGcuucggagcuguguuGGCCGa -3'
miRNA:   3'- caCGUUGAGGGCGG------GCGCGCu--------------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 30714 0.72 0.316013
Target:  5'- -gGC-GCUCCuggaCGCCCGCGCGGacguGGCCGa -3'
miRNA:   3'- caCGuUGAGG----GCGGGCGCGCU----CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 117342 0.72 0.316013
Target:  5'- -gGCGccCUCCCGCCCGC-UGGGGCCc -3'
miRNA:   3'- caCGUu-GAGGGCGGGCGcGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 56780 0.72 0.316716
Target:  5'- -cGCGAUUgCCCGCCCGCcguucgucgcgcucaCGGGGCCGg -3'
miRNA:   3'- caCGUUGA-GGGCGGGCGc--------------GCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 66155 0.72 0.323098
Target:  5'- cGUGCuggacguGCUCUCggccguGCCCGCGCG-GGCCGc -3'
miRNA:   3'- -CACGu------UGAGGG------CGGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 42166 0.72 0.323098
Target:  5'- cGUGUGGCUgcacgccgCCCGCCCGCcCGAG-CCGu -3'
miRNA:   3'- -CACGUUGA--------GGGCGGGCGcGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 41398 0.72 0.330301
Target:  5'- -aGCcGCUCCCGgaCCGCGCGGucuagcagccGGCCGg -3'
miRNA:   3'- caCGuUGAGGGCg-GGCGCGCU----------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 130908 0.72 0.330301
Target:  5'- -cGCAGCUCgUGCCgGCGCGc-GCCGg -3'
miRNA:   3'- caCGUUGAGgGCGGgCGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 13954 0.72 0.330301
Target:  5'- cUGCGGCUgCgGCCCGUGgGAGcCCGc -3'
miRNA:   3'- cACGUUGAgGgCGGGCGCgCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 66046 0.72 0.336884
Target:  5'- -cGCGGCccgCCCGUCCGCGCGcggcgccAGACgCGg -3'
miRNA:   3'- caCGUUGa--GGGCGGGCGCGC-------UCUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 57397 0.72 0.337622
Target:  5'- cGUGCGGCgggUCCCGCUCGCG-GAG-CUGg -3'
miRNA:   3'- -CACGUUG---AGGGCGGGCGCgCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 81115 0.72 0.337622
Target:  5'- -gGCuGCUCCagagCGCgCCGCGCGucGGACCGg -3'
miRNA:   3'- caCGuUGAGG----GCG-GGCGCGC--UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 72663 0.72 0.34431
Target:  5'- -cGCGGCcgCCCGCCgGCGaccccggcccugcUGAGGCCGg -3'
miRNA:   3'- caCGUUGa-GGGCGGgCGC-------------GCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 125001 0.72 0.34506
Target:  5'- -aGCc-CUCCCGCUCGCGCuacGGCCGg -3'
miRNA:   3'- caCGuuGAGGGCGGGCGCGcu-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 120068 0.72 0.34506
Target:  5'- -aGCcccGGCUCCUGCcgagCCGCGCGGGGCgGg -3'
miRNA:   3'- caCG---UUGAGGGCG----GGCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 81558 0.72 0.352614
Target:  5'- -cGcCGGC-CCCGCgcagCUGCGCGGGGCCGg -3'
miRNA:   3'- caC-GUUGaGGGCG----GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 14309 0.72 0.352614
Target:  5'- -cGCGgccccGCUCCCGCUgcuCGCgGUGGGGCCGg -3'
miRNA:   3'- caCGU-----UGAGGGCGG---GCG-CGCUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.