miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 13954 0.72 0.330301
Target:  5'- cUGCGGCUgCgGCCCGUGgGAGcCCGc -3'
miRNA:   3'- cACGUUGAgGgCGGGCGCgCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 14309 0.72 0.352614
Target:  5'- -cGCGgccccGCUCCCGCUgcuCGCgGUGGGGCCGg -3'
miRNA:   3'- caCGU-----UGAGGGCGG---GCG-CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 14424 0.67 0.584554
Target:  5'- uGUGCGggGCUCCgcuguuuggCGCCgaGCGCGcGGCCGc -3'
miRNA:   3'- -CACGU--UGAGG---------GCGGg-CGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 14891 0.71 0.392118
Target:  5'- -cGCuACggggCCGUCCGCGCGcAGGCCGa -3'
miRNA:   3'- caCGuUGag--GGCGGGCGCGC-UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 15057 0.69 0.470042
Target:  5'- -cGCuuuauCUCCCGcCCCGCGCGgcucggcaGGAgCCGg -3'
miRNA:   3'- caCGuu---GAGGGC-GGGCGCGC--------UCU-GGC- -5'
6677 5' -61.1 NC_001847.1 + 16385 0.68 0.545399
Target:  5'- uUGCAugUucgCCCGCucgcagcagCCGCGCGGGGCg- -3'
miRNA:   3'- cACGUugA---GGGCG---------GGCGCGCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 16411 0.7 0.425724
Target:  5'- -gGCAGCgcuuuUCCCGCgUcUGCGAGGCCGg -3'
miRNA:   3'- caCGUUG-----AGGGCGgGcGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 16681 0.66 0.634173
Target:  5'- -cGCAGC-CuuGgCUGCGCGGGcgaGCCGg -3'
miRNA:   3'- caCGUUGaGggCgGGCGCGCUC---UGGC- -5'
6677 5' -61.1 NC_001847.1 + 18455 0.69 0.470042
Target:  5'- cGUGCggUgCCgCGCCCGCaGCGccGGACCc -3'
miRNA:   3'- -CACGuuGaGG-GCGGGCG-CGC--UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 18658 0.7 0.425724
Target:  5'- -cGCGACgccgugCCCGCCCGCGacgcuGAGcagaACCGc -3'
miRNA:   3'- caCGUUGa-----GGGCGGGCGCg----CUC----UGGC- -5'
6677 5' -61.1 NC_001847.1 + 19229 0.74 0.234499
Target:  5'- cUGCGACagCCagCGCCUGCGCGAG-CCGg -3'
miRNA:   3'- cACGUUGa-GG--GCGGGCGCGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 19230 0.71 0.368072
Target:  5'- -gGCAGCccccccuucgaUCCCGUCCGCGUccggcGGACCGg -3'
miRNA:   3'- caCGUUG-----------AGGGCGGGCGCGc----UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 19288 0.66 0.663981
Target:  5'- uGUGCGGCgggCCGCCaacaaacgaGCGCGGccgcGGCCGu -3'
miRNA:   3'- -CACGUUGag-GGCGGg--------CGCGCU----CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 19454 0.67 0.594439
Target:  5'- -cGCAgccgGCUCUCGCCCcCGCGcaGCCGc -3'
miRNA:   3'- caCGU----UGAGGGCGGGcGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 19667 0.7 0.443157
Target:  5'- -gGCAAg-CCCagacguGCCCGCGCGGGugUGg -3'
miRNA:   3'- caCGUUgaGGG------CGGGCGCGCUCugGC- -5'
6677 5' -61.1 NC_001847.1 + 19708 0.7 0.417162
Target:  5'- aUGcCGGCUCCgGcCCCGCGaCGAGguugGCCGg -3'
miRNA:   3'- cAC-GUUGAGGgC-GGGCGC-GCUC----UGGC- -5'
6677 5' -61.1 NC_001847.1 + 20079 0.71 0.392118
Target:  5'- -gGCGGCUCCCG-CgGCGCGGcccGGCCa -3'
miRNA:   3'- caCGUUGAGGGCgGgCGCGCU---CUGGc -5'
6677 5' -61.1 NC_001847.1 + 20617 0.67 0.594439
Target:  5'- uGUGU---UCCCGCgCCGCGCc-GACCGc -3'
miRNA:   3'- -CACGuugAGGGCG-GGCGCGcuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 21009 0.66 0.663981
Target:  5'- gGUGCgAACUCaCGCCgaGCGCGcGugCGa -3'
miRNA:   3'- -CACG-UUGAGgGCGGg-CGCGCuCugGC- -5'
6677 5' -61.1 NC_001847.1 + 21638 0.69 0.488418
Target:  5'- -cGCGGg-CCgCGCCCGgGCGcGACCGg -3'
miRNA:   3'- caCGUUgaGG-GCGGGCgCGCuCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.