miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 122025 0.75 0.21839
Target:  5'- -cGCGGCg-CCGCCCGCGCGccccGGCCGc -3'
miRNA:   3'- caCGUUGagGGCGGGCGCGCu---CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 121895 0.68 0.525175
Target:  5'- cUGCGAa--CCGCCCGCGUGGccccgcuGGCCa -3'
miRNA:   3'- cACGUUgagGGCGGGCGCGCU-------CUGGc -5'
6677 5' -61.1 NC_001847.1 + 121844 0.68 0.535735
Target:  5'- cUGCAGCccggcgCCCGCguagCGCGCGcacaGGGCCGg -3'
miRNA:   3'- cACGUUGa-----GGGCGg---GCGCGC----UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 121811 0.7 0.417162
Target:  5'- -gGCGccuGCUCgCCGCCCGUGCcgGAGcCCGu -3'
miRNA:   3'- caCGU---UGAG-GGCGGGCGCG--CUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 120430 0.69 0.479187
Target:  5'- -cGCGuucgcCUCCUGCCCGCGCGucGCg- -3'
miRNA:   3'- caCGUu----GAGGGCGGGCGCGCucUGgc -5'
6677 5' -61.1 NC_001847.1 + 120340 0.69 0.460986
Target:  5'- --cCAGCUCCCGgCCGgGCGgcgcuacaacgGGACCGu -3'
miRNA:   3'- cacGUUGAGGGCgGGCgCGC-----------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 120298 0.67 0.614281
Target:  5'- -cGCAACgCUCGCgC-UGCGGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGCGgGcGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 120068 0.72 0.34506
Target:  5'- -aGCcccGGCUCCUGCcgagCCGCGCGGGGCgGg -3'
miRNA:   3'- caCG---UUGAGGGCG----GGCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 118234 1.09 0.000937
Target:  5'- aGUGCAACUCCCGCCCGCGCGAGACCGg -3'
miRNA:   3'- -CACGUUGAGGGCGGGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 117510 0.66 0.663981
Target:  5'- -gGCAGgUUCCGCUccaCGCGCggcgacgacGAGGCCGu -3'
miRNA:   3'- caCGUUgAGGGCGG---GCGCG---------CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 117342 0.72 0.316013
Target:  5'- -gGCGccCUCCCGCCCGC-UGGGGCCc -3'
miRNA:   3'- caCGUu-GAGGGCGGGCGcGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 116291 0.68 0.515644
Target:  5'- -gGCAGCgugcCCCGCUgacccgugcggcgCGCGCGAGgacGCCGu -3'
miRNA:   3'- caCGUUGa---GGGCGG-------------GCGCGCUC---UGGC- -5'
6677 5' -61.1 NC_001847.1 + 115805 0.67 0.624224
Target:  5'- cUGCGGCUCCgCGCgCUGCGCuGcGGCgGg -3'
miRNA:   3'- cACGUUGAGG-GCG-GGCGCG-CuCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 115412 0.67 0.604351
Target:  5'- -aGCGGCccgCCgCGUCCGgccaaccucguCGCGGGGCCGg -3'
miRNA:   3'- caCGUUGa--GG-GCGGGC-----------GCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 114633 0.67 0.614281
Target:  5'- aGUG-GGCcCCCGCCCGCgacgacgcGCGAG-CCGu -3'
miRNA:   3'- -CACgUUGaGGGCGGGCG--------CGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 114237 0.66 0.634173
Target:  5'- cGUGUAGCgCUCGCCCGCGaCGcGcucgcugcccaGCCGa -3'
miRNA:   3'- -CACGUUGaGGGCGGGCGC-GCuC-----------UGGC- -5'
6677 5' -61.1 NC_001847.1 + 113396 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 112964 0.79 0.117779
Target:  5'- cUGCAGCUCUCGCCCGaGC-AGGCCGg -3'
miRNA:   3'- cACGUUGAGGGCGGGCgCGcUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 112762 0.73 0.27597
Target:  5'- -cGCGAC-CCCgGCCCGCG-GGGGCCu -3'
miRNA:   3'- caCGUUGaGGG-CGGGCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 111664 0.69 0.470042
Target:  5'- -aGCGACgCgCGCCgaGCGCGAuGGCCGa -3'
miRNA:   3'- caCGUUGaGgGCGGg-CGCGCU-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.