miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 91166 0.75 0.279499
Target:  5'- cCU-CCCGCGuuuuGGGGCgGCACAAGGCCAg -3'
miRNA:   3'- -GAuGGGCGUc---CUCCG-UGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 135021 0.75 0.286147
Target:  5'- -gGCCCGCGGGcgGGGCcgggGCGCGGGGCg- -3'
miRNA:   3'- gaUGGGCGUCC--UCCG----UGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 108364 0.75 0.272975
Target:  5'- -gGCgCGCAGGAgGGCGCGCGcacugaccAGGCCGc -3'
miRNA:   3'- gaUGgGCGUCCU-CCGUGUGU--------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 51635 0.75 0.272975
Target:  5'- ---aCCGCAGGaAGGCACGCAGcGCCGc -3'
miRNA:   3'- gaugGGCGUCC-UCCGUGUGUUcCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30354 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 118655 0.74 0.321255
Target:  5'- -cGCgCGCGGGAGGCGCAagaGAGGUg- -3'
miRNA:   3'- gaUGgGCGUCCUCCGUGUg--UUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 82920 0.74 0.324199
Target:  5'- -aGCacaGCAGGGGGCACACGuucuugcccccguugAGGCCGc -3'
miRNA:   3'- gaUGgg-CGUCCUCCGUGUGU---------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130609 0.74 0.321255
Target:  5'- -cACCCGCGGGcGGCcgcCGCGAGGCa- -3'
miRNA:   3'- gaUGGGCGUCCuCCGu--GUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 133167 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 63853 0.74 0.306837
Target:  5'- cCUGCgCGCGGGGGGCgcauGCGCGAcGGCUg -3'
miRNA:   3'- -GAUGgGCGUCCUCCG----UGUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 54113 0.74 0.306837
Target:  5'- -cGCCgCGCGGGAGGCGCagcaccggcuGCAAguGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCCUCCGUG----------UGUU--CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 120499 0.74 0.313983
Target:  5'- -cGCUCGCAGcGAgcGGCGCGCGAGcGCCGc -3'
miRNA:   3'- gaUGGGCGUC-CU--CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 48833 0.74 0.321255
Target:  5'- cCUugCCGCGcGGGGGCGC-CucGGCCGc -3'
miRNA:   3'- -GAugGGCGU-CCUCCGUGuGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 83937 0.74 0.328652
Target:  5'- -gGCCCGCucGaAGuGCGCGCGGGGCCGg -3'
miRNA:   3'- gaUGGGCGucC-UC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 76176 0.73 0.383906
Target:  5'- gCUGCa-GCAGGAGGUgagccaGCugAGGGCCGg -3'
miRNA:   3'- -GAUGggCGUCCUCCG------UGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 76757 0.73 0.375645
Target:  5'- -cGCUCggGCGGGGGGCACGCaAAGGCgGg -3'
miRNA:   3'- gaUGGG--CGUCCUCCGUGUG-UUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 18661 0.73 0.359487
Target:  5'- -gAUCCgGCGGGAgugcaGGUACGCGAGGCCc -3'
miRNA:   3'- gaUGGG-CGUCCU-----CCGUGUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 127770 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 4193 0.73 0.367505
Target:  5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3'
miRNA:   3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.