miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 29158 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 127770 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 107713 0.72 0.392287
Target:  5'- -cGCUCGCGGGcGGGCACccCGGGGCUAc -3'
miRNA:   3'- gaUGGGCGUCC-UCCGUGu-GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 79562 0.72 0.392287
Target:  5'- -gGCUCGCGGGGGGCGCcggGCucgcGGCCu -3'
miRNA:   3'- gaUGGGCGUCCUCCGUG---UGuu--CCGGu -5'
6679 3' -58.4 NC_001847.1 + 86887 0.72 0.392287
Target:  5'- -aGCCUGCGGGGuGCGCgACGAgGGCCAg -3'
miRNA:   3'- gaUGGGCGUCCUcCGUG-UGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 85935 0.72 0.400786
Target:  5'- -aGCCCGCGGGccccGGCGCG-AGGGCUAc -3'
miRNA:   3'- gaUGGGCGUCCu---CCGUGUgUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 62791 0.72 0.408534
Target:  5'- -gGCCCGgGGGGGcgagaucGCGCACAagccGGGCCGa -3'
miRNA:   3'- gaUGGGCgUCCUC-------CGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 95506 0.72 0.409401
Target:  5'- -cGCCCGUGGGccuggcGGGCGCGCcAGGCUu -3'
miRNA:   3'- gaUGGGCGUCC------UCCGUGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 116757 0.72 0.418131
Target:  5'- -gGCCCGCAGGcgAGGaCGC-CGAGGCa- -3'
miRNA:   3'- gaUGGGCGUCC--UCC-GUGuGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 6691 0.72 0.418131
Target:  5'- -gGCCgGcCGGGcGcGCGCGCAGGGCCGa -3'
miRNA:   3'- gaUGGgC-GUCCuC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 86034 0.72 0.418131
Target:  5'- aCUGCUgCGCugguugGGcGAGGCGCugGGGGCCAc -3'
miRNA:   3'- -GAUGG-GCG------UC-CUCCGUGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 105224 0.72 0.421654
Target:  5'- -cACCCGCGGGcgcgcgggcacaggcGGGCGCACuucGGGCg- -3'
miRNA:   3'- gaUGGGCGUCC---------------UCCGUGUGu--UCCGgu -5'
6679 3' -58.4 NC_001847.1 + 68593 0.72 0.426973
Target:  5'- gCUG-CCGCAGuAGGCGCACGcguccagcGGGCCGg -3'
miRNA:   3'- -GAUgGGCGUCcUCCGUGUGU--------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 121855 0.72 0.426973
Target:  5'- -cGCCCGCGuagcGcGCGCACAGGGCCGg -3'
miRNA:   3'- gaUGGGCGUccu-C-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96443 0.71 0.444984
Target:  5'- -gGCCC-C-GGAGGCACugGAGGCg- -3'
miRNA:   3'- gaUGGGcGuCCUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 12043 0.71 0.444984
Target:  5'- -cAUCCGCAGGGGGguUGCuagcGGGCCc -3'
miRNA:   3'- gaUGGGCGUCCUCCguGUGu---UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 83192 0.71 0.444984
Target:  5'- ---aCgGCGGGGGGCGCGCAgacgagcuuGGGCCc -3'
miRNA:   3'- gaugGgCGUCCUCCGUGUGU---------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 125358 0.71 0.448637
Target:  5'- -gGCCagaCGCaacagcauuagcaccGGGGGGCGCGCGAGGUCGa -3'
miRNA:   3'- gaUGG---GCG---------------UCCUCCGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 74241 0.71 0.451388
Target:  5'- cCUGCCCcgaGguGGAGGuCACGCAAcucuucccgggcgcGGCCGc -3'
miRNA:   3'- -GAUGGG---CguCCUCC-GUGUGUU--------------CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.