miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30992 0.66 0.733321
Target:  5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3'
miRNA:   3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 96364 0.67 0.6934
Target:  5'- -gGCCgGC-GGuGGCAaugGCGGGGCCGg -3'
miRNA:   3'- gaUGGgCGuCCuCCGUg--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 29507 0.67 0.70348
Target:  5'- -aGCCCGCcggcGGAGGUgccgGCGCGGcuggcGGCCGc -3'
miRNA:   3'- gaUGGGCGu---CCUCCG----UGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 52906 0.66 0.733321
Target:  5'- cCUAggUCCGCGGGcagcggcucgGGGCGCccGCgAAGGCCGu -3'
miRNA:   3'- -GAU--GGGCGUCC----------UCCGUG--UG-UUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 3786 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96477 0.66 0.781169
Target:  5'- -gGCuuGCGGGcGGCGgGCGucGCCAc -3'
miRNA:   3'- gaUGggCGUCCuCCGUgUGUucCGGU- -5'
6679 3' -58.4 NC_001847.1 + 60860 0.66 0.75279
Target:  5'- -cGCCCGCc-GAGGCcaGCGCAgcgcgcgcgcGGGCCc -3'
miRNA:   3'- gaUGGGCGucCUCCG--UGUGU----------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 88721 0.66 0.746991
Target:  5'- -cGCCCG-AGGAGGCugugcugcucgauaaGCAgcAGGCCGc -3'
miRNA:   3'- gaUGGGCgUCCUCCG---------------UGUguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5662 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 134188 0.66 0.75279
Target:  5'- -cGCCCgGCGcagcguGGAgcGGCGCGCGcGGGCCGa -3'
miRNA:   3'- gaUGGG-CGU------CCU--CCGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 42958 0.66 0.771831
Target:  5'- -cGCgCGCGGGGGGgGC---GGGCCGc -3'
miRNA:   3'- gaUGgGCGUCCUCCgUGuguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27858 0.67 0.72345
Target:  5'- -cGCCagggaCGCGGGGGGCGC-CGAGGaCGc -3'
miRNA:   3'- gaUGG-----GCGUCCUCCGUGuGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 62925 0.67 0.72345
Target:  5'- -gGCCCGCGGGcGGCuccucguCGgGGGGCa- -3'
miRNA:   3'- gaUGGGCGUCCuCCGu------GUgUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 92015 0.66 0.740179
Target:  5'- -cGCCCGCGGGcccgcgccgucugcGGGCAcCGCcGGcGCCu -3'
miRNA:   3'- gaUGGGCGUCC--------------UCCGU-GUGuUC-CGGu -5'
6679 3' -58.4 NC_001847.1 + 91583 0.67 0.70348
Target:  5'- -cGCCCGCGGcGAaGCGCGCAaaccgcGGcGCCGu -3'
miRNA:   3'- gaUGGGCGUC-CUcCGUGUGU------UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 130833 0.83 0.080202
Target:  5'- aCUACCCGCAGGcGGCGCGCGAGuaccaaggcGCCGg -3'
miRNA:   3'- -GAUGGGCGUCCuCCGUGUGUUC---------CGGU- -5'
6679 3' -58.4 NC_001847.1 + 58627 0.67 0.6934
Target:  5'- -cGCCCGCGGGgacguAGGC-CGCGaacacGGGCUc -3'
miRNA:   3'- gaUGGGCGUCC-----UCCGuGUGU-----UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 28046 0.67 0.7135
Target:  5'- -aGCCgagGCGGGGgcGGCGCcccuCAAGGCCGa -3'
miRNA:   3'- gaUGGg--CGUCCU--CCGUGu---GUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.