miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 27672 0.7 0.511133
Target:  5'- cCUGCUcgaCGCGGcgcgucgggcuGAGGCGCGCGAGcGCCGg -3'
miRNA:   3'- -GAUGG---GCGUC-----------CUCCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 27754 0.67 0.6934
Target:  5'- gUugCgGCGGGGGGCuguGCGGGGCg- -3'
miRNA:   3'- gAugGgCGUCCUCCGug-UGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 27792 0.68 0.662887
Target:  5'- -cGCCggagaCGCGGGggccaccgaGGGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUGG-----GCGUCC---------UCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27858 0.67 0.72345
Target:  5'- -cGCCagggaCGCGGGGGGCGC-CGAGGaCGc -3'
miRNA:   3'- gaUGG-----GCGUCCUCCGUGuGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 28046 0.67 0.7135
Target:  5'- -aGCCgagGCGGGGgcGGCGCcccuCAAGGCCGa -3'
miRNA:   3'- gaUGGg--CGUCCU--CCGUGu---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 28097 0.66 0.766168
Target:  5'- cCUGCCCG-GGGccGCGCGCGAcaccgccgauuucauGGCCGg -3'
miRNA:   3'- -GAUGGGCgUCCucCGUGUGUU---------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 28312 0.69 0.581017
Target:  5'- --cCCCGCGaGAGGCGgGCGccGGGCCc -3'
miRNA:   3'- gauGGGCGUcCUCCGUgUGU--UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 28342 0.67 0.70348
Target:  5'- --cCCCGCGGGGccGCGCGCccGGGCCc -3'
miRNA:   3'- gauGGGCGUCCUc-CGUGUGu-UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 29089 0.68 0.618816
Target:  5'- cCUGCCgccggcgagcacggCGCGGGcGGCGCGCGAgcGGCUg -3'
miRNA:   3'- -GAUGG--------------GCGUCCuCCGUGUGUU--CCGGu -5'
6679 3' -58.4 NC_001847.1 + 29158 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 29323 0.66 0.74213
Target:  5'- -gGCCCGCGacgcgguGGAGcGCGCGCGGcuccagcgcgcGGCCc -3'
miRNA:   3'- gaUGGGCGU-------CCUC-CGUGUGUU-----------CCGGu -5'
6679 3' -58.4 NC_001847.1 + 29372 0.67 0.6934
Target:  5'- -gACCgCGCGgcggccGGAGcugccGCGCGCGAGGCCc -3'
miRNA:   3'- gaUGG-GCGU------CCUC-----CGUGUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 29475 0.7 0.511133
Target:  5'- -cGCCCGCggccgAGGcGGCACGCucuccGGCCGc -3'
miRNA:   3'- gaUGGGCG-----UCCuCCGUGUGuu---CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 29507 0.67 0.70348
Target:  5'- -aGCCCGCcggcGGAGGUgccgGCGCGGcuggcGGCCGc -3'
miRNA:   3'- gaUGGGCGu---CCUCCG----UGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30354 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 30425 0.66 0.781169
Target:  5'- -aGCUCGUGgcgggcgcGGAGGCGC-CGGGGCUg -3'
miRNA:   3'- gaUGGGCGU--------CCUCCGUGuGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 30680 0.67 0.673094
Target:  5'- gCUACCCGgAGGuucGGGgAgACGAGGgCAg -3'
miRNA:   3'- -GAUGGGCgUCC---UCCgUgUGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 30906 0.7 0.524864
Target:  5'- -aGCCCGguG-AGGCGCGCGccggcggugcggcggAGGCCu -3'
miRNA:   3'- gaUGGGCguCcUCCGUGUGU---------------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 30992 0.66 0.733321
Target:  5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3'
miRNA:   3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.