miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 62791 0.72 0.408534
Target:  5'- -gGCCCGgGGGGGcgagaucGCGCACAagccGGGCCGa -3'
miRNA:   3'- gaUGGGCgUCCUC-------CGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 63409 0.7 0.511133
Target:  5'- -aGCCuCGCacGGGAGcGCACGCGgcgccggcGGGCCGg -3'
miRNA:   3'- gaUGG-GCG--UCCUC-CGUGUGU--------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133922 0.7 0.511133
Target:  5'- -gGCCUGCGGGcGGCGCGCGcuGGaGCUg -3'
miRNA:   3'- gaUGGGCGUCCuCCGUGUGU--UC-CGGu -5'
6679 3' -58.4 NC_001847.1 + 124561 0.7 0.510157
Target:  5'- -gGCCCGCgcgcgcgGGGGGGCcgccgGCGCcGGGCCc -3'
miRNA:   3'- gaUGGGCG-------UCCUCCG-----UGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 56759 0.71 0.491782
Target:  5'- gUACCUGCAGGAgcuGGCGCGCucgaacGGCa- -3'
miRNA:   3'- gAUGGGCGUCCU---CCGUGUGuu----CCGgu -5'
6679 3' -58.4 NC_001847.1 + 128817 0.71 0.491782
Target:  5'- -gGCgCGCAGGc-GCGCACAaaaaGGGCCAa -3'
miRNA:   3'- gaUGgGCGUCCucCGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 85137 0.71 0.491782
Target:  5'- -gGCCCaGCAGGcgguGGGCGCGC-GGGCUc -3'
miRNA:   3'- gaUGGG-CGUCC----UCCGUGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 77645 0.71 0.482234
Target:  5'- -cGCCCGU-GGAGGCcuucgACGCGGGcGCCGa -3'
miRNA:   3'- gaUGGGCGuCCUCCG-----UGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 33873 0.71 0.482234
Target:  5'- gCUuCuuGCAGGAGGCGCcgccgcGCGuGGCCGc -3'
miRNA:   3'- -GAuGggCGUCCUCCGUG------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 20389 0.71 0.482234
Target:  5'- -cGCUCGCGGGuGGCuCACcggugauuagaAAGGCCAc -3'
miRNA:   3'- gaUGGGCGUCCuCCGuGUG-----------UUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 45839 0.71 0.482234
Target:  5'- -cACUCGCuGGGcGGCACGgcCGAGGCCu -3'
miRNA:   3'- gaUGGGCGuCCU-CCGUGU--GUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 76762 0.71 0.472776
Target:  5'- gCUGCCCGCc---GGCACccgcuACGAGGCCGa -3'
miRNA:   3'- -GAUGGGCGuccuCCGUG-----UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 39835 0.71 0.463413
Target:  5'- cCUGCCgGCGccgcgccuGGAGGCGC-CAGcGGCCGc -3'
miRNA:   3'- -GAUGGgCGU--------CCUCCGUGuGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 119023 0.71 0.454148
Target:  5'- -gACCCGCAGGugGGGCGCACGcuguGGGa-- -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGU----UCCggu -5'
6679 3' -58.4 NC_001847.1 + 76390 0.71 0.454148
Target:  5'- -gGCCuCGgGGGGGGCGCcgGGGGCCGc -3'
miRNA:   3'- gaUGG-GCgUCCUCCGUGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 83192 0.71 0.444984
Target:  5'- ---aCgGCGGGGGGCGCGCAgacgagcuuGGGCCc -3'
miRNA:   3'- gaugGgCGUCCUCCGUGUGU---------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 116757 0.72 0.418131
Target:  5'- -gGCCCGCAGGcgAGGaCGC-CGAGGCa- -3'
miRNA:   3'- gaUGGGCGUCC--UCC-GUGuGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 6691 0.72 0.418131
Target:  5'- -gGCCgGcCGGGcGcGCGCGCAGGGCCGa -3'
miRNA:   3'- gaUGGgC-GUCCuC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 86034 0.72 0.418131
Target:  5'- aCUGCUgCGCugguugGGcGAGGCGCugGGGGCCAc -3'
miRNA:   3'- -GAUGG-GCG------UC-CUCCGUGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.