miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 29507 0.67 0.70348
Target:  5'- -aGCCCGCcggcGGAGGUgccgGCGCGGcuggcGGCCGc -3'
miRNA:   3'- gaUGGGCGu---CCUCCG----UGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 26838 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 118447 0.66 0.737245
Target:  5'- gCU-CCUGCuGGuGGCggccucgugccugcgGCGCAAGGCCc -3'
miRNA:   3'- -GAuGGGCGuCCuCCG---------------UGUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 116632 0.66 0.732338
Target:  5'- -cGCCCGCAgcgcuGGccucggcagccgcGGGCACGCugguGGCCu -3'
miRNA:   3'- gaUGGGCGU-----CC-------------UCCGUGUGuu--CCGGu -5'
6679 3' -58.4 NC_001847.1 + 54703 0.67 0.72345
Target:  5'- -cGCCCGCgGGGAGGacgACGCGcGGGUCc -3'
miRNA:   3'- gaUGGGCG-UCCUCCg--UGUGU-UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 8450 0.66 0.771831
Target:  5'- -gGCgCCGgGucGGAGGCgGCGCcGGGCCGg -3'
miRNA:   3'- gaUG-GGCgU--CCUCCG-UGUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 100505 0.66 0.75279
Target:  5'- -cGCgCCGCucGGccucGGCGCGCAGGcGCCGg -3'
miRNA:   3'- gaUG-GGCGu-CCu---CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 11360 0.66 0.75279
Target:  5'- -cGCCgCGCAGGccccgAGGCcaauGCAaguCAGGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCC-----UCCG----UGU---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 91252 0.66 0.743104
Target:  5'- -aGCUCGCAcGcGGCGCACAugGGGUCGc -3'
miRNA:   3'- gaUGGGCGUcCuCCGUGUGU--UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 18119 0.66 0.75279
Target:  5'- -aGCuCCGCGGcgguGGGGCGCGCGcgaaagucaaAGGUCAg -3'
miRNA:   3'- gaUG-GGCGUC----CUCCGUGUGU----------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96364 0.67 0.6934
Target:  5'- -gGCCgGC-GGuGGCAaugGCGGGGCCGg -3'
miRNA:   3'- gaUGGgCGuCCuCCGUg--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 65732 0.67 0.673094
Target:  5'- -gAgCCGCAGGAacagcgccgGGCcCGCaAAGGCCGc -3'
miRNA:   3'- gaUgGGCGUCCU---------CCGuGUG-UUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 46337 0.68 0.642405
Target:  5'- -cGCCCGCGGGGccgcgucggcGGCAuCGgGGGGCUc -3'
miRNA:   3'- gaUGGGCGUCCU----------CCGU-GUgUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 48533 0.68 0.632149
Target:  5'- -gGCCCGCcucGAGGCGCGCccGGaGCCGc -3'
miRNA:   3'- gaUGGGCGuc-CUCCGUGUGu-UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 127348 0.67 0.673094
Target:  5'- gCUGCCgCgGCAGG-GGCG-GCGGGGCCc -3'
miRNA:   3'- -GAUGG-G-CGUCCuCCGUgUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 61433 0.67 0.70348
Target:  5'- -cGCCCGCGGccgcgccgccGGGCGCGgCGAGGCg- -3'
miRNA:   3'- gaUGGGCGUCc---------UCCGUGU-GUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 24325 0.67 0.687326
Target:  5'- uUGCCCGCGcGGGGGCGauguccaagUggagggggggcccgaGCAGGGCCc -3'
miRNA:   3'- gAUGGGCGU-CCUCCGU---------G---------------UGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 118876 0.67 0.683268
Target:  5'- uUACCCGgGcGcucGGUGCACGGGGCCGg -3'
miRNA:   3'- gAUGGGCgUcCu--CCGUGUGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.