miRNA display CGI


Results 81 - 100 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 77205 0.68 0.642405
Target:  5'- gCUGCCCGCGacGGAgccgcgGGC-CGCcGGGCCc -3'
miRNA:   3'- -GAUGGGCGU--CCU------CCGuGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 122122 0.68 0.652654
Target:  5'- -gACgCUGCAGGucgcgacggccGGCGCGCAGGGCg- -3'
miRNA:   3'- gaUG-GGCGUCCu----------CCGUGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 93078 0.68 0.652654
Target:  5'- aUGCgCCGCAGcGgcaccagccccAGGCACACGAG-CCAg -3'
miRNA:   3'- gAUG-GGCGUC-C-----------UCCGUGUGUUCcGGU- -5'
6679 3' -58.4 NC_001847.1 + 88819 0.68 0.661864
Target:  5'- -gGCCCGCGGGcGGCcgugcugcgcucgGCGCuacggcuGGCCGu -3'
miRNA:   3'- gaUGGGCGUCCuCCG-------------UGUGuu-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 75204 0.68 0.662887
Target:  5'- uCUGUCUGCAGGc-GCACggucaGCGAGGCCAg -3'
miRNA:   3'- -GAUGGGCGUCCucCGUG-----UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 12085 0.68 0.662887
Target:  5'- -aGCgCCGCGGGuccGGCGCcCGcGGCCGu -3'
miRNA:   3'- gaUG-GGCGUCCu--CCGUGuGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 21514 0.68 0.662887
Target:  5'- -cGCCUcgGCGGGGGcCGCGCG-GGCCAa -3'
miRNA:   3'- gaUGGG--CGUCCUCcGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 74593 0.68 0.662887
Target:  5'- -gGCCUGCAGGAcGGCGu----GGCCAa -3'
miRNA:   3'- gaUGGGCGUCCU-CCGUguguuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130605 0.68 0.662887
Target:  5'- -cGCCggagaCGCGGGggccaccgaGGGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUGG-----GCGUCC---------UCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30680 0.67 0.673094
Target:  5'- gCUACCCGgAGGuucGGGgAgACGAGGgCAg -3'
miRNA:   3'- -GAUGGGCgUCC---UCCgUgUGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 27088 0.67 0.673094
Target:  5'- -cGCCCacGCuGGAGGCGuCGcCGAGGUCGc -3'
miRNA:   3'- gaUGGG--CGuCCUCCGU-GU-GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 10775 0.67 0.673094
Target:  5'- -cGCgCGCGGGAagagcGGUACGCG-GGCCu -3'
miRNA:   3'- gaUGgGCGUCCU-----CCGUGUGUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 64036 0.67 0.673094
Target:  5'- uUGCCCGCGGuucacgccuGGGCGCugGAcgcccuGGCCGg -3'
miRNA:   3'- gAUGGGCGUCc--------UCCGUGugUU------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 66200 0.67 0.673094
Target:  5'- -cGCCUgGCuGGAGGCGCAgccCGcGGCCGc -3'
miRNA:   3'- gaUGGG-CGuCCUCCGUGU---GUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 68462 0.67 0.673094
Target:  5'- -cGCCCGCGGccGGGGCcccgccgcgcggGCGCAAGcgcGCCAg -3'
miRNA:   3'- gaUGGGCGUC--CUCCG------------UGUGUUC---CGGU- -5'
6679 3' -58.4 NC_001847.1 + 100866 0.67 0.673094
Target:  5'- -gGCCCGCcGGGGGUcgGCgGCAGGGgCGc -3'
miRNA:   3'- gaUGGGCGuCCUCCG--UG-UGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 49391 0.67 0.683268
Target:  5'- aCUACCgGCcuGGGuGGCGCGgGGcugacGGCCAa -3'
miRNA:   3'- -GAUGGgCG--UCCuCCGUGUgUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 33298 0.67 0.683268
Target:  5'- cCUGCUCGCGGcAGGCGCAac-GGCgCAc -3'
miRNA:   3'- -GAUGGGCGUCcUCCGUGUguuCCG-GU- -5'
6679 3' -58.4 NC_001847.1 + 45514 0.67 0.683268
Target:  5'- -gGCgCCGCcgccGGGcGGCGCggACGGGGCCGu -3'
miRNA:   3'- gaUG-GGCG----UCCuCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 89908 0.67 0.683268
Target:  5'- -cGCCCG-AGGuuGUgccGCGCGAGGCCGc -3'
miRNA:   3'- gaUGGGCgUCCucCG---UGUGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.