miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
668 3' -53.3 AC_000018.1 + 13304 0.66 0.687391
Target:  5'- --cACCuACCGCCgc--GCUGGAcauGACa -3'
miRNA:   3'- caaUGG-UGGCGGaguaCGACCUu--CUG- -5'
668 3' -53.3 AC_000018.1 + 24123 0.66 0.675824
Target:  5'- aGUUGCCgACUaCCUCAccggGCUugggggGGAAGACg -3'
miRNA:   3'- -CAAUGG-UGGcGGAGUa---CGA------CCUUCUG- -5'
668 3' -53.3 AC_000018.1 + 18842 0.66 0.664212
Target:  5'- ----gCugCGCUUCGUGCccguugaccgGGAGGACa -3'
miRNA:   3'- caaugGugGCGGAGUACGa---------CCUUCUG- -5'
668 3' -53.3 AC_000018.1 + 5780 0.66 0.660721
Target:  5'- --gACCGCUaccccucccacgugGCCUCcuuuGUGCUGGccuGGACa -3'
miRNA:   3'- caaUGGUGG--------------CGGAG----UACGACCu--UCUG- -5'
668 3' -53.3 AC_000018.1 + 19197 0.66 0.640898
Target:  5'- --aGCCAgaGCCUCAaGUUGGAgaagaaucauGGACu -3'
miRNA:   3'- caaUGGUggCGGAGUaCGACCU----------UCUG- -5'
668 3' -53.3 AC_000018.1 + 21043 0.67 0.594255
Target:  5'- --aACCACCuGCCugcUCAUagGCUGGAAGu- -3'
miRNA:   3'- caaUGGUGG-CGG---AGUA--CGACCUUCug -5'
668 3' -53.3 AC_000018.1 + 25271 0.67 0.571106
Target:  5'- --cACCGUCGCCUCGgacCUGGcAGACa -3'
miRNA:   3'- caaUGGUGGCGGAGUac-GACCuUCUG- -5'
668 3' -53.3 AC_000018.1 + 10309 0.68 0.559611
Target:  5'- --cACCACCGCCUCcgGUaucaccUGGAu--- -3'
miRNA:   3'- caaUGGUGGCGGAGuaCG------ACCUucug -5'
668 3' -53.3 AC_000018.1 + 28730 0.68 0.548181
Target:  5'- -aUGCCACaauGuUCUCuuUGCUGGGAGGCc -3'
miRNA:   3'- caAUGGUGg--C-GGAGu-ACGACCUUCUG- -5'
668 3' -53.3 AC_000018.1 + 26735 0.73 0.264025
Target:  5'- cUUGCCcCCGaCUC-UGCUGGAAGAUg -3'
miRNA:   3'- cAAUGGuGGCgGAGuACGACCUUCUG- -5'
668 3' -53.3 AC_000018.1 + 10266 1.09 0.00081
Target:  5'- gGUUACCACCGCCUCAUGCUGGAAGACc -3'
miRNA:   3'- -CAAUGGUGGCGGAGUACGACCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.