miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
668 5' -59.7 AC_000018.1 + 10186 0.72 0.133678
Target:  5'- cCGGGGCUCCGGggGCAaggucuuccagcauGAgGCGGUGGUa -3'
miRNA:   3'- -GCCUCGGGGCCgaUGU--------------CU-CGCUACCG- -5'
668 5' -59.7 AC_000018.1 + 14142 0.72 0.138603
Target:  5'- aGGAGacgagCCGuGCUagGCGGAGCGGUGGUg -3'
miRNA:   3'- gCCUCgg---GGC-CGA--UGUCUCGCUACCG- -5'
668 5' -59.7 AC_000018.1 + 9706 0.69 0.242277
Target:  5'- aGGAGCaccaggucuuugggUCCGGCUuguuggaugcGCAG-GCGAUGGg -3'
miRNA:   3'- gCCUCG--------------GGGCCGA----------UGUCuCGCUACCg -5'
668 5' -59.7 AC_000018.1 + 27202 0.66 0.363751
Target:  5'- gGGAGUuuCCUGGUacacCAGGGCGGcgGGCc -3'
miRNA:   3'- gCCUCG--GGGCCGau--GUCUCGCUa-CCG- -5'
668 5' -59.7 AC_000018.1 + 28191 0.68 0.277611
Target:  5'- gCGGAGCUcaccuCCGGuUUugGGAGUGGuaguauUGGCa -3'
miRNA:   3'- -GCCUCGG-----GGCC-GAugUCUCGCU------ACCG- -5'
668 5' -59.7 AC_000018.1 + 18487 0.69 0.236662
Target:  5'- gCGGuguGCCCCcaggacgcggucuGGCUACGGcaacgggcuguacGGCGGUGGg -3'
miRNA:   3'- -GCCu--CGGGG-------------CCGAUGUC-------------UCGCUACCg -5'
668 5' -59.7 AC_000018.1 + 10232 1.1 0.000166
Target:  5'- cCGGAGCCCCGGCUACAGAGCGAUGGCc -3'
miRNA:   3'- -GCCUCGGGGCCGAUGUCUCGCUACCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.