miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 5890 0.66 0.975337
Target:  5'- cGCCccUGC-CUCGcGCGCGUUgguCuGGCa -3'
miRNA:   3'- -CGGc-ACGaGAGC-CGCGCAAau-GuUCG- -5'
6681 5' -52.7 NC_001847.1 + 45127 0.66 0.975337
Target:  5'- cGCagGUGCagCUCGGCGCcUUcUGCGGGg -3'
miRNA:   3'- -CGg-CACGa-GAGCCGCGcAA-AUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 58643 0.66 0.975337
Target:  5'- gGCCGcgaacacggGCUCccaGGCGC---UGCAGGCg -3'
miRNA:   3'- -CGGCa--------CGAGag-CCGCGcaaAUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 130235 0.66 0.975337
Target:  5'- cGCCGgcGCggUCGGUGuCGUUcGCAgcGGCg -3'
miRNA:   3'- -CGGCa-CGagAGCCGC-GCAAaUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 95771 0.66 0.975337
Target:  5'- cGCgGgccGCUCU-GGCGCGgggggcggcGCGGGCg -3'
miRNA:   3'- -CGgCa--CGAGAgCCGCGCaaa------UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 123453 0.66 0.975337
Target:  5'- uGCCGgGCUUggccCGGCGaCGgccgccGCGGGCu -3'
miRNA:   3'- -CGGCaCGAGa---GCCGC-GCaaa---UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 20995 0.66 0.973736
Target:  5'- cGCCGcUGCaugCUggugcgaacucacgcCGaGCGCGcgUGCGAGCa -3'
miRNA:   3'- -CGGC-ACGa--GA---------------GC-CGCGCaaAUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 62095 0.66 0.973736
Target:  5'- cGCCGcgcgucauguacagGUUCUgCGGCGUGUUgccCAGGUc -3'
miRNA:   3'- -CGGCa-------------CGAGA-GCCGCGCAAau-GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 119216 0.66 0.972628
Target:  5'- cGCCGcgGCcaccgCGGgGCGgcgggGCAGGCa -3'
miRNA:   3'- -CGGCa-CGaga--GCCgCGCaaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 73358 0.66 0.972628
Target:  5'- cGCgCGUGCcggCGGgGgGUcgGCGGGCa -3'
miRNA:   3'- -CG-GCACGagaGCCgCgCAaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 2231 0.66 0.972628
Target:  5'- cGCCGcgGCgCUgGGCGCGg--GCGuguGGUa -3'
miRNA:   3'- -CGGCa-CGaGAgCCGCGCaaaUGU---UCG- -5'
6681 5' -52.7 NC_001847.1 + 42564 0.66 0.972628
Target:  5'- gGCCGcguccucCUCggCGGCGCGguugauCAAGCu -3'
miRNA:   3'- -CGGCac-----GAGa-GCCGCGCaaau--GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 117490 0.66 0.972628
Target:  5'- aGCUcUGgUUUCaGCGCGUggGCAGGUu -3'
miRNA:   3'- -CGGcACgAGAGcCGCGCAaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 48677 0.66 0.972628
Target:  5'- uCCGUGCcgCcgUCGGCGcCGUcgGCGuccaGGCa -3'
miRNA:   3'- cGGCACGa-G--AGCCGC-GCAaaUGU----UCG- -5'
6681 5' -52.7 NC_001847.1 + 40100 0.66 0.972628
Target:  5'- cGCCgGUGC-CUCGGUugguagguGCGgcUGCGcgugGGCg -3'
miRNA:   3'- -CGG-CACGaGAGCCG--------CGCaaAUGU----UCG- -5'
6681 5' -52.7 NC_001847.1 + 60486 0.66 0.972628
Target:  5'- cGCCGccGCUUugugCGcGCGCGggccgGCGGGCc -3'
miRNA:   3'- -CGGCa-CGAGa---GC-CGCGCaaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 105044 0.66 0.972628
Target:  5'- cGCCGcgGCgCUgGGCGCGg--GCGuguGGUa -3'
miRNA:   3'- -CGGCa-CGaGAgCCGCGCaaaUGU---UCG- -5'
6681 5' -52.7 NC_001847.1 + 107109 0.66 0.972628
Target:  5'- cGCCGcG-UCU-GGCGUGU--GCAGGCg -3'
miRNA:   3'- -CGGCaCgAGAgCCGCGCAaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 85629 0.66 0.972346
Target:  5'- cGCCGgcgcgcuUGCUCgcaGGCGCGcgU-CAGGUu -3'
miRNA:   3'- -CGGC-------ACGAGag-CCGCGCaaAuGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 115800 0.66 0.972062
Target:  5'- aGCCGcUGCggCUCcGCGCGcugcgcugcgGCGGGCu -3'
miRNA:   3'- -CGGC-ACGa-GAGcCGCGCaaa-------UGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.