Results 21 - 40 of 302 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6682 | 3' | -61.7 | NC_001847.1 | + | 129295 | 0.66 | 0.575652 |
Target: 5'- cUGGUAg-GGGCgggCCUGGUgcAAGGCGg -3' miRNA: 3'- -ACCGUgaCCCGa--GGGCCGguUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 128229 | 0.66 | 0.603516 |
Target: 5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3' miRNA: 3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 127331 | 0.67 | 0.517119 |
Target: 5'- cGGCGCcGaGGCggCCGGCUgccgcggcAGGGGCGg -3' miRNA: 3'- aCCGUGaC-CCGagGGCCGG--------UUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 125547 | 0.67 | 0.5364 |
Target: 5'- cGGUcguccccgcgGCUGcGGCUCgaucgCGGCCGcGGGCGg -3' miRNA: 3'- aCCG----------UGAC-CCGAGg----GCCGGUuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 125395 | 0.67 | 0.546135 |
Target: 5'- gGGCGCcccgGGGCagggcccgCCCGGUCGcguGGCa -3' miRNA: 3'- aCCGUGa---CCCGa-------GGGCCGGUuu-CCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 125081 | 0.77 | 0.125886 |
Target: 5'- gGGCGCUGGGCccgCgCGGCCAAGaugucguucgcGGCGg -3' miRNA: 3'- aCCGUGACCCGa--GgGCCGGUUU-----------CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 124772 | 0.67 | 0.5364 |
Target: 5'- cGGCACcgggggGGGCUUUCGGC----GGCGg -3' miRNA: 3'- aCCGUGa-----CCCGAGGGCCGguuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 124585 | 0.72 | 0.287948 |
Target: 5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3' miRNA: 3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 124544 | 0.66 | 0.625527 |
Target: 5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3' miRNA: 3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 124448 | 0.7 | 0.390958 |
Target: 5'- cGGCGC-GGGCcgcgCCCGGgCGcgaccggAGGGCGa -3' miRNA: 3'- aCCGUGaCCCGa---GGGCCgGU-------UUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 123850 | 0.67 | 0.555926 |
Target: 5'- cGGCcCUGaGGCcccgagaccCCCGGCCcuGAGGCc -3' miRNA: 3'- aCCGuGAC-CCGa--------GGGCCGGu-UUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 123632 | 0.71 | 0.344442 |
Target: 5'- cGGC-CgGGGCggcgCCCuuGGCUGAAGGCGc -3' miRNA: 3'- aCCGuGaCCCGa---GGG--CCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 123062 | 0.67 | 0.517119 |
Target: 5'- gGGCGCcGGacccgcggcGCUCCgCGGCCuc-GGCGu -3' miRNA: 3'- aCCGUGaCC---------CGAGG-GCCGGuuuCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 122407 | 0.77 | 0.131108 |
Target: 5'- aGGCGCUGGGCcgcaCCCGGCCcuccaaaauccuGGGCa -3' miRNA: 3'- aCCGUGACCCGa---GGGCCGGuu----------UCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 121258 | 1.07 | 0.000897 |
Target: 5'- gUGGCACUGGGCUCCCGGCCAAAGGCGc -3' miRNA: 3'- -ACCGUGACCCGAGGGCCGGUUUCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 120320 | 0.72 | 0.27438 |
Target: 5'- cGGCugauuuucCUGGaacaccaGCUCCCGGCCGGGcGGCGc -3' miRNA: 3'- aCCGu-------GACC-------CGAGGGCCGGUUU-CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 119541 | 0.68 | 0.487806 |
Target: 5'- cGGCagGCUGGGCaaggggcgCgCGGCCAGAcucugcgggcagcGGCGg -3' miRNA: 3'- aCCG--UGACCCGa-------GgGCCGGUUU-------------CCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 119273 | 0.68 | 0.488739 |
Target: 5'- cGGCGCUgucGGaGCUgCCGucuucggcgaacGCCGAGGGCa -3' miRNA: 3'- aCCGUGA---CC-CGAgGGC------------CGGUUUCCGc -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 118951 | 0.71 | 0.342185 |
Target: 5'- aUGGCGCgggccaguuccgauUcGGGgUCCgCGGCCAAcgGGGCGg -3' miRNA: 3'- -ACCGUG--------------A-CCCgAGG-GCCGGUU--UCCGC- -5' |
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6682 | 3' | -61.7 | NC_001847.1 | + | 118435 | 0.7 | 0.375537 |
Target: 5'- cGGCGCcgugGGGCUCCUG-CUGGuGGCGg -3' miRNA: 3'- aCCGUGa---CCCGAGGGCcGGUUuCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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